View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_80 (Length: 321)
Name: NF20665_low_80
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 62 - 305
Target Start/End: Original strand, 4247908 - 4248151
Alignment:
| Q |
62 |
ctttacttggtagacttattgaaagtgatcaatgcagaagagaaaaagttaagttaattttcaacttagacctgtcctaacttcctgaagttaggctagt |
161 |
Q |
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| T |
4247908 |
ctttacttggttgacttattgaaagtgatcaatgcagaagagaaaaagttgagttaattttcaacttagacctgtcctaacttgaggaagttaggctagt |
4248007 |
T |
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| Q |
162 |
ggaccaactgtccctgtcaaatgtcagtaggaaaattgaaaaccttacatgatttttcttaaaaaggtcaaatgcaatcaacactgaaatcaagaatatg |
261 |
Q |
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| T |
4248008 |
ggaccaactgtccctgtcaaatgtcagtagaaaaattgaaaaccttacatgatttttcttaaaaaggtcaaatgcaatcaacactgaaatcaagaatatg |
4248107 |
T |
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| Q |
262 |
cacactaagaattcctttgataataatgtattgatacatatttg |
305 |
Q |
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| T |
4248108 |
cacactaagaattcctttgataataatgtattgatacatatttg |
4248151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4247849 - 4247780
Alignment:
| Q |
1 |
aactttgaaactttaaaacaggtattaacaagaaaatttaaaataaaatttatgaagaaagctttacttg |
70 |
Q |
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| T |
4247849 |
aactttgtaactttaaaacaggtattaacaagaaaatttaaaataaaatttatgaagaaagctttacttg |
4247780 |
T |
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