View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_83 (Length: 313)
Name: NF20665_low_83
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_83 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 313
Target Start/End: Complemental strand, 51496509 - 51496201
Alignment:
| Q |
5 |
gagagagatgaagcagattaagtacatgcctgaagatccatcaaggctatgtacttgtgaagaggaacatcatactggcgaagattgtgtatcagcctct |
104 |
Q |
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| T |
51496509 |
gagacagaagaaacagattaagtacatgcctgaagatccatcaaggctatgtacttgtgaagaggaacatcatactggcgaagattgtgcatcaacctct |
51496410 |
T |
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| Q |
105 |
tttcctaaaaaatacaaaataacaacaaagttagccaagagtgtaaataagtaatttaatacatgaaatgttattattatgttacattatgaaataatct |
204 |
Q |
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| T |
51496409 |
tttcctaaaaaatacaaaataacaacaaagttagccaagagtgtcaataagtaatttaatacatgaaatgttattattatgttacattatgaaataatct |
51496310 |
T |
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| Q |
205 |
tagtataatcaaattcaaataacctgcagctcttgagtgaagacagctggtggcaaaaggccacgaacataatgagcatctcgttctttctcagtgaagg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51496309 |
tagtataatcaaattcaaataacctgcagctcttgagtgaagacagctggtggcaaaaggccacgaacataatgagcatctctttctttctcagtgaagg |
51496210 |
T |
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| Q |
305 |
caagtcctt |
313 |
Q |
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| T |
51496209 |
caagtcctt |
51496201 |
T |
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