View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_87 (Length: 308)

Name: NF20665_low_87
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_87
NF20665_low_87
[»] chr4 (8 HSPs)
chr4 (1-293)||(26646683-26646975)
chr4 (69-182)||(13682888-13683001)
chr4 (1-158)||(22187992-22188155)
chr4 (1-77)||(13683383-13683460)
chr4 (52-121)||(33077994-33078063)
chr4 (1-83)||(13689704-13689787)
chr4 (115-171)||(13689467-13689523)
chr4 (1-39)||(26646392-26646430)
[»] chr8 (2 HSPs)
chr8 (44-182)||(37001549-37001686)
chr8 (1-182)||(36991785-36991969)
[»] chr7 (1 HSPs)
chr7 (1-182)||(8596632-8596820)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 26646683 - 26646975
Alignment:
Q  1 caacactattgtatcacacttttactattaactaattttttaaattaaacaatcacaccaatacttaatataaagaaacaagactcaggtcaataaataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26646683 caacactattgtatcacacttttactattaactaattttttaaattaaacaatcacacgaatacttaatataaagaaacaagactcaggtcaataaataa 26646782  T
Q  101 atcatatatggtatctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttcatatataggtttatactcttt 200  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646783 gtcatatatggtacctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttcatatataggtttatactcttt 26646882  T
Q  201 atcaacaacccttttaagtagggatggcacatcatcatcaagcaccaactcaaaccaatgttcctgaaatatgacaaacttatccgtagtatt 293  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || || || ||||||||||||||||||||||||    
T  26646883 atcaacaacccttttaagtagggatggcacatcatcatcaaccaccaactcaaaacaatctttctcaattatgacaaacttatccgtagtatt 26646975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 13683001 - 13682888
Alignment:
Q  69 tataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtg 168  Q
    |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  13683001 tataaagaaacaagacccaggtcaataaataaatcatatatgatacctgaatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtg 13682902  T
Q  169 acaatgctttcata 182  Q
    ||| | ||||||||    
T  13682901 acatttctttcata 13682888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 22187992 - 22188155
Alignment:
Q  1 caacactattgtatcacactttt-actattaactaattttttaaattaaacaatcacaccaatacttaatataaagaaacaaga-ctcaggtcaataaat 98  Q
    ||||||||||||||||||||||| | ||||||||| ||||| ||||| |||||||| |  ||||||||||||||| | |||||| | || |||| |||||    
T  22187992 caacactattgtatcacactttttattattaactagtttttaaaattgaacaatcatatgaatacttaatataaaaatacaagatcccatgtcattaaat 22188091  T
Q  99 aaatcatatat----ggtatctgaatagatagtcaagaacaaatatttccagaatcatgcaacc 158  Q
    |||||||||||    |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  22188092 aaatcatatatatatggtacctgaatagatagtcaagaacaaatatttccacaatcatgcaacc 22188155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13683460 - 13683383
Alignment:
Q  1 caacactattgtatcacactttt-actattaactaattttttaaattaaacaatcacaccaatacttaatataaagaa 77  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  13683460 caacactattgtatcacactttttattattaactaattttttaaattaaacaatcatataaatacttaatataaagaa 13683383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 33078063 - 33077994
Alignment:
Q  52 atcacaccaatacttaatataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaata 121  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||||||| || ||||||| |||||||    
T  33078063 atcacacgaatacttaatataaagaaacaagatccaggtcaataaataaatgatgtatggtacctgaata 33077994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13689787 - 13689704
Alignment:
Q  1 caacactattgtatcacactttt-actattaactaattttttaaattaaacaatcacaccaatacttaatataaagaaacaaga 83  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| |   |||||||||||||| | ||||||    
T  13689787 caacactattgtatcacactttttattattaactaattttttaaattaagcaatcatatatatacttaatataaaaatacaaga 13689704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 13689523 - 13689467
Alignment:
Q  115 ctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgaca 171  Q
    ||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||    
T  13689523 ctgaatacatagtcaagaacaaatatttccacaatcatgcaacccaactttgtgaca 13689467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26646392 - 26646430
Alignment:
Q  1 caacactattgtatcacacttttactattaactaatttt 39  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  26646392 caacactaatgtatcacacttttattattaactaatttt 26646430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 37001549 - 37001686
Alignment:
Q  44 attaaacaatcacaccaatacttaatataaagaaacaagactcaggtcaataaataaatcatatatggtatctgaatagatagtcaagaacaaatatttc 143  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  37001549 attaaacaatcacacgaatacttaatataaagaaacaagac-caggtcaataaatatatcataaatggtacctgaatagatagtcaagaacaaatatttc 37001647  T
Q  144 cagaatcatgcaaccaaactgtgtgacaatgctttcata 182  Q
    || |||| ||||||| |||| ||||||||||||||||||    
T  37001648 cacaatcctgcaacccaactctgtgacaatgctttcata 37001686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 36991785 - 36991969
Alignment:
Q  1 caacactattgtatcacactttt-actattaactaattttttaaattaaacaatcacaccaatacttaatataaagaa-acaaga-ctcaggtcaataaa 97  Q
    ||||||| ||| ||||||||||| | |||||| |||||  | ||||||||||||||||| ||||||||||||||| || |||||| | ||  ||| ||||    
T  36991785 caacactgttgcatcacactttttattattaagtaattcataaaattaaacaatcacacgaatacttaatataaaaaatacaagatcccatttcattaaa 36991884  T
Q  98 taaatcatatatggtatctgaatagatagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttcata 182  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||    
T  36991885 taaatcatatatggtacctgaatagatagtcaagaacaaatatttccacaatcctgcaacccaactctgtgacaatgctttcata 36991969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 8596632 - 8596820
Alignment:
Q  1 caacactattgtatcacactttt-actattaactaattttttaaatt-aaacaatcacaccaatacttaatataaagaaacaagactcaggt-caataaa 97  Q
    ||||||| ||||||||||||||| | ||| ||||||||||| ||||| ||||||||| |  ||||||||||||||| | ||||||  | | | || ||||    
T  8596632 caacactgttgtatcacactttttattataaactaatttttaaaatttaaacaatcatatgaatacttaatataaaaatacaagatcctgtttcattaaa 8596731  T
Q  98 taaatcatatatggtatctgaatag----atagtcaagaacaaatatttccagaatcatgcaaccaaactgtgtgacaatgctttcata 182  Q
    |||||||||||||||| ||||||||    ||||||||||||||||||||||| |||||||||||| |||| |||| || ||||||||||    
T  8596732 taaatcatatatggtacctgaatagatagatagtcaagaacaaatatttccacaatcatgcaacccaactttgtggcattgctttcata 8596820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University