View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_9 (Length: 602)

Name: NF20665_low_9
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_9
NF20665_low_9
[»] chr4 (3 HSPs)
chr4 (13-584)||(35766405-35766976)
chr4 (513-554)||(19356937-19356978)
chr4 (256-363)||(19358741-19358848)
[»] chr7 (9 HSPs)
chr7 (7-138)||(36260088-36260217)
chr7 (174-364)||(36254976-36255168)
chr7 (513-557)||(20495205-20495249)
chr7 (256-326)||(46769018-46769088)
chr7 (44-118)||(36255221-36255293)
chr7 (250-288)||(18953261-18953299)
chr7 (250-288)||(18983308-18983346)
chr7 (250-288)||(18997954-18997992)
chr7 (174-227)||(20495533-20495586)
[»] chr5 (5 HSPs)
chr5 (510-554)||(29598115-29598159)
chr5 (511-554)||(29641813-29641856)
chr5 (511-554)||(29821176-29821219)
chr5 (512-554)||(42297562-42297604)
chr5 (511-552)||(29647133-29647174)
[»] chr6 (1 HSPs)
chr6 (277-326)||(30398771-30398820)


Alignment Details
Target: chr4 (Bit Score: 560; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 13 - 584
Target Start/End: Complemental strand, 35766976 - 35766405
Alignment:
Q  13 aatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35766976 aatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaat 35766877  T
Q  113 cacaaattctctaatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggctaaccaatttagacaaccattcagatacgca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  35766876 cacaaattctctaatatccattttctcctaaccagaaacaccaacataaaaaagtttattgcgaagggccaaccaatttagacaaccattcagatacaca 35766777  T
Q  213 ccatcattcacaccatggtttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35766776 ccatcattcacaccatggtttgtattaaaaggaacaagagccacaggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacat 35766677  T
Q  313 cagttctatcttcagcttcattaaaaaataactgcactaccttataagtctccgacaatttatcaatcaaaaccaaacccaaacttaaaatggatataca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35766676 cagttctatcttcagcttcattaaaaaataactgcactaccttataagtctccgacaatttatcaatcaaaaccaaacccaaacttaaaatggatataca 35766577  T
Q  413 tacagacataaataatcccaaaaatgccctaactttggggaaattttatgagtggcagggttccagaaacgcagccaggtatttatatatgtaaagtggt 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35766576 tacagacataaataatcccaaaaatgccctaactttggggaaattttatgagtggcagggttccagaaacgcagccaggtatttatatatgtaaagtggt 35766477  T
Q  513 aagaataaccaagcaaacaaagccatccattgcatgaaccaataagaaaattgcaatccatatcccataatc 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35766476 aagaataaccaagcaaacaaagccatccattgcatgaaccaataagaaaattgcaatccttatcccataatc 35766405  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 554
Target Start/End: Complemental strand, 19356978 - 19356937
Alignment:
Q  513 aagaataaccaagcaaacaaagccatccattgcatgaaccaa 554  Q
    ||||||||||||||||||||||| |||||||||| |||||||    
T  19356978 aagaataaccaagcaaacaaagcaatccattgcaagaaccaa 19356937  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 19358848 - 19358741
Alignment:
Q  256 caggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttcagcttcattaaaaaataactgcactacctt 355  Q
    |||||||| |||||||  || |||||||||||| || |||| |||||||| || ||  |||||| | |||||||||||  |||| ||||  ||| |||||    
T  19358848 caggaaaaatttgaataggtttccaaacattatcacgcaaatttaaaactcgcgcacgagttctgttttcagcttcatccaaaagtaacatcacaacctt 19358749  T
Q  356 ataagtct 363  Q
    ||||||||    
T  19358748 ataagtct 19358741  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 36260217 - 36260088
Alignment:
Q  7 tccaagaatatacttaacaatggttcaatagctgacgtttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcga 106  Q
    ||||| ||||||| || | |||| ||||||| |||| ||||||||||||| | |||||||||||||| |||||| |||||  |||| |||| ||||| ||    
T  36260217 tccaacaatatacataccgatggctcaataggtgacatttcatcaaaaccgcaaggaggcatcaactttgtgtatgtctc--tgtttccagatcaagtga 36260120  T
Q  107 aacaatcacaaattctctaatatccattttct 138  Q
    |||||||||||||| | ||| || ||||||||    
T  36260119 aacaatcacaaattttttaacattcattttct 36260088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 364
Target Start/End: Complemental strand, 36255168 - 36254976
Alignment:
Q  174 cgaagggctaaccaatttagacaaccattcagatacgcaccatcattcacaccatggtttgtatta--aaaggaacaagagccacaggaaaactttgaat 271  Q
    ||||| || |||||||| | || |||||||| |||| ||||||||||||||||| |  | |||| |  ||||||| |||| |  |||||||| |||||||    
T  36255168 cgaagtgccaaccaattaaaactaccattcaaatacacaccatcattcacaccaggactagtatcacaaaaggaagaagaacagcaggaaaattttgaat 36255069  T
Q  272 gcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttcagcttcattaaaaaataactgcactaccttataagtctc 364  Q
      || ||||||||||||||| || || ||||  |||||| |||||||||| || | | ||||  |||| ||||  ||| ||||||||||||||    
T  36255068 aggtttccaaacattattacacacacataaagtttgcacgtcagttctatttttaacatcatccaaaattaacatcacaaccttataagtctc 36254976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 557
Target Start/End: Complemental strand, 20495249 - 20495205
Alignment:
Q  513 aagaataaccaagcaaacaaagccatccattgcatgaaccaataa 557  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  20495249 aagaaaaaccaagcaaacaaagccatccattgcaagaaccaataa 20495205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 46769088 - 46769018
Alignment:
Q  256 caggaaaactttgaatgcgtctccaaacattattacccaaacttaaaacttgcacatcagttctatcttca 326  Q
    ||||||||||||||||   |||||||| ||||| ||||| ||| ||||||||||||| |||||||| ||||    
T  46769088 caggaaaactttgaatagttctccaaatattatcacccacactcaaaacttgcacatgagttctattttca 46769018  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 36255293 - 36255221
Alignment:
Q  44 tttcatcaaaacccccaggaggcatcaactgtgtgtacgtctctatgttcccaggtcaagcgaaacaatcacaaa 118  Q
    ||||||||||||| |  |||||||||| ||| ||||| ||||||  |||||||| ||||||| ||||||||||||    
T  36255293 tttcatcaaaaccacgcggaggcatcagctgcgtgtatgtctct--gttcccagatcaagcgcaacaatcacaaa 36255221  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 18953261 - 18953299
Alignment:
Q  250 gagccacaggaaaactttgaatgcgtctccaaacattat 288  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  18953261 gagccacaggaaaactttgaatatgtctccaaacattat 18953299  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 18983308 - 18983346
Alignment:
Q  250 gagccacaggaaaactttgaatgcgtctccaaacattat 288  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  18983308 gagccacaggaaaactttgaatatgtctccaaacattat 18983346  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 18997954 - 18997992
Alignment:
Q  250 gagccacaggaaaactttgaatgcgtctccaaacattat 288  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  18997954 gagccacaggaaaactttgaatatgtctccaaacattat 18997992  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 20495586 - 20495533
Alignment:
Q  174 cgaagggctaaccaatttagacaaccattcagatacgcaccatcattcacacca 227  Q
    ||||| || |||||||| |||| |||||||| |||| |||||||||||||||||    
T  20495586 cgaagagccaaccaattcagactaccattcaaatacacaccatcattcacacca 20495533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 510 - 554
Target Start/End: Original strand, 29598115 - 29598159
Alignment:
Q  510 ggtaagaataaccaagcaaacaaagccatccattgcatgaaccaa 554  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  29598115 ggtaagaataaccaagcaaacaaagcaatccattgcatgaaccaa 29598159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 511 - 554
Target Start/End: Complemental strand, 29641856 - 29641813
Alignment:
Q  511 gtaagaataaccaagcaaacaaagccatccattgcatgaaccaa 554  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  29641856 gtaagaataaccaagcaaacaaagcaatccattgcatgaaccaa 29641813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 554
Target Start/End: Original strand, 29821176 - 29821219
Alignment:
Q  511 gtaagaataaccaagcaaacaaagccatccattgcatgaaccaa 554  Q
    |||||||||||  |||||||||||| ||||||||||||||||||    
T  29821176 gtaagaataactgagcaaacaaagcaatccattgcatgaaccaa 29821219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 512 - 554
Target Start/End: Complemental strand, 42297604 - 42297562
Alignment:
Q  512 taagaataaccaagcaaacaaagccatccattgcatgaaccaa 554  Q
    ||||||||||| |||||||||| | ||||||||||||||||||    
T  42297604 taagaataaccgagcaaacaaatcaatccattgcatgaaccaa 42297562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 552
Target Start/End: Complemental strand, 29647174 - 29647133
Alignment:
Q  511 gtaagaataaccaagcaaacaaagccatccattgcatgaacc 552  Q
    |||||||||||| |||||||||||| ||| ||||||||||||    
T  29647174 gtaagaataaccgagcaaacaaagcaatctattgcatgaacc 29647133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 30398820 - 30398771
Alignment:
Q  277 tccaaacattattacccaaacttaaaacttgcacatcagttctatcttca 326  Q
    |||||||||||||| ||| |||||||||| |||||| |||||||| ||||    
T  30398820 tccaaacattattagccacacttaaaactcgcacatgagttctattttca 30398771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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