View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_90 (Length: 302)
Name: NF20665_low_90
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 5448194 - 5447932
Alignment:
| Q |
23 |
aagttgtttatccagccatgacttgtcttaattctatttgaagtaaacaatgttttcaatgacggatagggatggtcgcaagccaaaaatgggcaagtga |
122 |
Q |
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| T |
5448194 |
aagttgtttatccaaccatgacttgtcttaattctatttgaagtaaacaatgttttcaatgacggatagggatggtcacaagccaaaaatgggcaagtga |
5448095 |
T |
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| Q |
123 |
aaggttttagaggaagcttggtaagccaggtaaaaaattaacatgatattagaaagtagaaagcagggaaaacccacacaaacacaatggagaaccataa |
222 |
Q |
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| T |
5448094 |
aaggttttagaggaagcttggtaagccaggtaaaaaattaacatgatattagaaagtagaaagcagggaaaacccacacaaacacaatggagaaccataa |
5447995 |
T |
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| Q |
223 |
ggtgctgatggtaattgtcaatttgcaacattgatagttttggttttggtccctccttttccctttcat |
291 |
Q |
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| T |
5447994 |
ggtgctgatggtaattgtcaatttgcaacattgatagttt------tggtccctccttttccctttcat |
5447932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 5456646 - 5456535
Alignment:
| Q |
135 |
gaagcttggtaagccaggtaaaaaattaacatgatattagaaagtagaaagcagggaaaacccacacaaacacaatggagaaccataaggtgctgatggt |
234 |
Q |
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| T |
5456646 |
gaagcttggtaagacaattgaaaaatgaatatgatactaaaaagtagtaagcagagaaaacccacacaaacacaatgaagaactataagctcctaatggt |
5456547 |
T |
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| Q |
235 |
aattgtcaattt |
246 |
Q |
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| T |
5456546 |
aattgtcaattt |
5456535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 5847486 - 5847528
Alignment:
| Q |
177 |
agtagaaagcagggaaaacccacacaaacacaatggagaacca |
219 |
Q |
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| T |
5847486 |
agtagtaagcatggaaaacccacacaaacacaatggagaacca |
5847528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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