View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_92 (Length: 299)

Name: NF20665_low_92
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_92
NF20665_low_92
[»] chr1 (45 HSPs)
chr1 (118-299)||(6115355-6115541)
chr1 (110-255)||(17324950-17325096)
chr1 (100-259)||(31735835-31735994)
chr1 (100-259)||(46432038-46432198)
chr1 (100-259)||(21948501-21948662)
chr1 (100-259)||(15295158-15295318)
chr1 (100-258)||(27339445-27339605)
chr1 (100-259)||(47906077-47906235)
chr1 (100-259)||(24325468-24325627)
chr1 (100-258)||(39931883-39932041)
chr1 (113-259)||(26520428-26520580)
chr1 (100-259)||(9459733-9459892)
chr1 (100-259)||(9463560-9463719)
chr1 (113-299)||(28998529-28998710)
chr1 (113-299)||(29004245-29004426)
chr1 (101-259)||(2510638-2510801)
chr1 (100-258)||(27337253-27337411)
chr1 (112-177)||(2949617-2949682)
chr1 (100-177)||(48664973-48665050)
chr1 (100-164)||(6115532-6115596)
chr1 (100-169)||(45693834-45693903)
chr1 (100-171)||(4131690-4131760)
chr1 (189-259)||(14352875-14352945)
chr1 (193-259)||(16561373-16561439)
chr1 (131-177)||(6996175-6996221)
chr1 (189-255)||(48665071-48665138)
chr1 (193-239)||(10115695-10115741)
chr1 (202-256)||(32260960-32261014)
chr1 (100-145)||(11693580-11693625)
chr1 (100-145)||(14352797-14352842)
chr1 (260-299)||(17318858-17318898)
chr1 (260-299)||(25248790-25248830)
chr1 (260-299)||(25251551-25251591)
chr1 (260-299)||(49495475-49495515)
chr1 (204-235)||(13785580-13785611)
chr1 (207-299)||(2949507-2949594)
chr1 (207-299)||(6995976-6996063)
chr1 (269-299)||(11457751-11457781)
chr1 (269-299)||(18307084-18307114)
chr1 (269-299)||(31423150-31423180)
chr1 (269-299)||(50079097-50079127)
chr1 (100-145)||(13785662-13785707)
chr1 (259-299)||(38925754-38925795)
chr1 (131-167)||(6997359-6997395)
chr1 (260-299)||(31425295-31425335)
[»] chr6 (19 HSPs)
chr6 (100-259)||(19704883-19705044)
chr6 (100-256)||(18317872-18318029)
chr6 (100-299)||(12195789-12195983)
chr6 (108-295)||(17011905-17012080)
chr6 (100-259)||(2629198-2629358)
chr6 (100-259)||(30034915-30035075)
chr6 (100-256)||(26932881-26933037)
chr6 (101-258)||(30967045-30967203)
chr6 (100-180)||(5275727-5275807)
chr6 (113-299)||(17852400-17852582)
chr6 (112-259)||(22858263-22858403)
chr6 (238-299)||(15719632-15719694)
chr6 (257-299)||(30729102-30729145)
chr6 (189-243)||(20526746-20526800)
chr6 (260-299)||(32447590-32447630)
chr6 (269-299)||(13057204-13057234)
chr6 (269-299)||(22490649-22490679)
chr6 (269-299)||(24338722-24338752)
chr6 (269-299)||(25477284-25477314)
[»] scaffold0511 (1 HSPs)
scaffold0511 (100-256)||(1856-2013)
[»] chr7 (44 HSPs)
chr7 (100-299)||(13099750-13099944)
chr7 (100-259)||(7094734-7094894)
chr7 (100-259)||(7092487-7092647)
chr7 (100-259)||(18345358-18345518)
chr7 (100-255)||(21989972-21990128)
chr7 (100-259)||(38396107-38396267)
chr7 (100-256)||(1849786-1849943)
chr7 (112-299)||(37412402-37412583)
chr7 (100-259)||(1606292-1606451)
chr7 (100-259)||(11757046-11757205)
chr7 (100-259)||(20299276-20299435)
chr7 (100-255)||(3677099-3677257)
chr7 (100-259)||(28485382-28485543)
chr7 (100-299)||(31156185-31156379)
chr7 (100-259)||(20625855-20626015)
chr7 (100-259)||(20629746-20629906)
chr7 (100-259)||(20642165-20642325)
chr7 (112-259)||(28487382-28487530)
chr7 (100-259)||(38393804-38393963)
chr7 (110-259)||(7472292-7472443)
chr7 (100-259)||(43253832-43253994)
chr7 (110-259)||(7349587-7349736)
chr7 (110-259)||(7351966-7352115)
chr7 (112-259)||(3035548-3035698)
chr7 (100-259)||(7470334-7470500)
chr7 (101-299)||(24258280-24258478)
chr7 (100-259)||(20297180-20297339)
chr7 (100-299)||(42331273-42331472)
chr7 (100-248)||(21470614-21470762)
chr7 (100-179)||(47865449-47865528)
chr7 (189-256)||(40281688-40281755)
chr7 (189-246)||(10691026-10691083)
chr7 (189-299)||(443505-443610)
chr7 (260-299)||(7188518-7188558)
chr7 (260-299)||(20137383-20137423)
chr7 (260-299)||(21678041-21678081)
chr7 (268-299)||(22828907-22828938)
chr7 (269-299)||(4296209-4296239)
chr7 (269-299)||(11355243-11355273)
chr7 (269-299)||(21680012-21680042)
chr7 (269-299)||(24465534-24465564)
chr7 (259-299)||(22392447-22392488)
chr7 (259-299)||(27306503-27306544)
chr7 (268-296)||(20091818-20091846)
[»] chr3 (24 HSPs)
chr3 (100-299)||(1313203-1313395)
chr3 (100-259)||(458071-458231)
chr3 (100-299)||(27635899-27636091)
chr3 (100-259)||(4104205-4104362)
chr3 (100-299)||(53915768-53915961)
chr3 (100-259)||(455694-455854)
chr3 (100-259)||(746543-746702)
chr3 (100-259)||(10621848-10622006)
chr3 (100-259)||(25533228-25533385)
chr3 (100-259)||(42990073-42990233)
chr3 (100-299)||(53917936-53918129)
chr3 (101-259)||(42992075-42992233)
chr3 (112-299)||(51943175-51943356)
chr3 (189-299)||(6561691-6561795)
chr3 (100-259)||(41848925-41849093)
chr3 (193-259)||(11072830-11072896)
chr3 (217-255)||(53973898-53973936)
chr3 (260-299)||(28137567-28137607)
chr3 (269-299)||(1626955-1626985)
chr3 (269-299)||(6484340-6484370)
chr3 (193-259)||(11066474-11066540)
chr3 (259-299)||(24979651-24979692)
chr3 (260-299)||(28100313-28100353)
chr3 (260-299)||(51675027-51675067)
[»] scaffold0154 (1 HSPs)
scaffold0154 (100-298)||(11748-11940)
[»] scaffold0005 (1 HSPs)
scaffold0005 (100-259)||(51830-51989)
[»] chr5 (27 HSPs)
chr5 (100-259)||(10586650-10586810)
chr5 (100-259)||(3373349-3373509)
chr5 (100-259)||(25803828-25803987)
chr5 (101-259)||(27910257-27910416)
chr5 (110-259)||(27912350-27912501)
chr5 (100-299)||(18596458-18596652)
chr5 (100-259)||(18466494-18466651)
chr5 (100-259)||(18468819-18468978)
chr5 (100-259)||(15552046-15552206)
chr5 (112-259)||(18509627-18509774)
chr5 (100-259)||(18511522-18511681)
chr5 (100-296)||(26097542-26097735)
chr5 (100-296)||(26098528-26098720)
chr5 (106-259)||(15143309-15143458)
chr5 (112-299)||(40221340-40221527)
chr5 (189-299)||(6661456-6661560)
chr5 (100-162)||(21288651-21288713)
chr5 (189-299)||(41585980-41586085)
chr5 (257-299)||(20507736-20507779)
chr5 (268-299)||(34530940-34530971)
chr5 (269-299)||(17072858-17072888)
chr5 (269-299)||(25904078-25904108)
chr5 (259-296)||(36208544-36208582)
chr5 (259-299)||(2818610-2818651)
chr5 (189-245)||(5778979-5779035)
chr5 (271-299)||(20043027-20043055)
chr5 (260-296)||(42770739-42770775)
[»] chr4 (35 HSPs)
chr4 (100-259)||(14787741-14787900)
chr4 (101-299)||(19322562-19322756)
chr4 (100-259)||(22132707-22132866)
chr4 (100-259)||(22134938-22135098)
chr4 (100-299)||(5100864-5101056)
chr4 (101-259)||(24348080-24348239)
chr4 (110-259)||(17662546-17662695)
chr4 (101-259)||(30136437-30136595)
chr4 (100-299)||(44600112-44600307)
chr4 (100-299)||(56030310-56030503)
chr4 (110-259)||(53405001-53405152)
chr4 (101-180)||(38890517-38890597)
chr4 (154-259)||(47211054-47211160)
chr4 (112-259)||(9022192-9022332)
chr4 (189-258)||(18709480-18709550)
chr4 (189-259)||(54928983-54929053)
chr4 (189-247)||(29609767-29609822)
chr4 (226-259)||(9863700-9863733)
chr4 (200-260)||(32274203-32274263)
chr4 (260-299)||(33415761-33415801)
chr4 (267-299)||(37313340-37313372)
chr4 (100-259)||(10112743-10112896)
chr4 (206-245)||(23001703-23001742)
chr4 (204-259)||(38208989-38209044)
chr4 (268-299)||(38928452-38928483)
chr4 (269-299)||(19095911-19095941)
chr4 (269-299)||(24446853-24446883)
chr4 (238-299)||(40091689-40091744)
chr4 (259-299)||(619721-619762)
chr4 (259-299)||(22801136-22801177)
chr4 (259-299)||(22803008-22803049)
chr4 (259-299)||(48486337-48486378)
chr4 (268-296)||(18535106-18535134)
chr4 (257-296)||(18537748-18537788)
chr4 (260-299)||(41997511-41997551)
[»] chr8 (22 HSPs)
chr8 (100-259)||(608591-608753)
chr8 (100-259)||(15809083-15809242)
chr8 (110-299)||(41382550-41382734)
chr8 (100-259)||(28283533-28283692)
chr8 (101-259)||(43529993-43530151)
chr8 (100-255)||(41384614-41384768)
chr8 (130-299)||(181434-181598)
chr8 (110-259)||(3873882-3874033)
chr8 (189-259)||(32339261-32339332)
chr8 (189-259)||(24873495-24873566)
chr8 (260-299)||(27911036-27911076)
chr8 (260-299)||(27957455-27957495)
chr8 (269-299)||(1225197-1225227)
chr8 (269-299)||(14419465-14419495)
chr8 (269-299)||(35872652-35872682)
chr8 (269-299)||(37214484-37214514)
chr8 (270-299)||(5623012-5623041)
chr8 (270-299)||(27107171-27107200)
chr8 (100-137)||(32339215-32339252)
chr8 (260-299)||(13858758-13858798)
chr8 (271-299)||(25952554-25952582)
chr8 (271-299)||(26775234-26775262)
[»] chr2 (21 HSPs)
chr2 (100-259)||(23452549-23452708)
chr2 (100-259)||(42452570-42452730)
chr2 (100-258)||(35218286-35218444)
chr2 (100-259)||(35215904-35216063)
chr2 (113-259)||(27583634-27583773)
chr2 (100-180)||(42923893-42923973)
chr2 (189-253)||(15693794-15693858)
chr2 (189-255)||(41304696-41304762)
chr2 (192-259)||(41303344-41303411)
chr2 (113-180)||(34575528-34575588)
chr2 (106-145)||(28568584-28568623)
chr2 (260-299)||(12342684-12342724)
chr2 (260-299)||(19007581-19007621)
chr2 (268-299)||(37963201-37963232)
chr2 (209-255)||(42923823-42923870)
chr2 (269-299)||(17849068-17849098)
chr2 (269-299)||(34979853-34979883)
chr2 (189-259)||(7502763-7502835)
chr2 (268-297)||(38414311-38414340)
chr2 (259-299)||(40032332-40032373)
chr2 (260-299)||(28196578-28196618)
[»] scaffold0031 (1 HSPs)
scaffold0031 (101-299)||(79005-79199)
[»] scaffold0133 (1 HSPs)
scaffold0133 (189-296)||(4724-4825)
[»] scaffold0468 (2 HSPs)
scaffold0468 (122-180)||(2022-2080)
scaffold0468 (193-259)||(1940-2004)
[»] scaffold0004 (1 HSPs)
scaffold0004 (269-299)||(79843-79873)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 118 - 299
Target Start/End: Complemental strand, 6115541 - 6115355
Alignment:
Q  118 atgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatca---tcagtgtgatattcgtt 214  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||        |||||||||   | |||||||||||||||    
T  6115541 atgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcattgaaggagaaaaaaaaaacgtatcactattagtgtgatattcgtt 6115442  T
Q  215 ccaaatttatgag--ttatatttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  6115441 ccaaatttatgagcgttatatttctctataaatatagaccttgtatcttgtatcctctaaaccttgagatagagggggctgaaacaa 6115355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 110 - 255
Target Start/End: Complemental strand, 17325096 - 17324950
Alignment:
Q  110 acgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatat 209  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||||| |||| |||||||    
T  17325096 acgatttgatgcaaatatattttgcaagggaatattatattttttatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttcagggtgatat 17324997  T
Q  210 tcgttccaaatttatgagttata-tttctctataaatatagaccttg 255  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||    
T  17324996 tcgttccaaatttatgagttatacttttactataaatatagaccttg 17324950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 31735994 - 31735835
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  31735994 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 31735896  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  31735895 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 31735835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 46432198 - 46432038
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  46432198 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 46432099  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    | |||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  46432098 actgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 46432038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 21948662 - 21948501
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaagga-gnnnnnnngaacgtatcat 198  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |        |||||||| |    
T  21948662 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcacagaaggaggaaaaaaaaaacgtatctt 21948563  T
Q  199 cagtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    ||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  21948562 cagtgtggtattcgttccaaatttatgagttatatgtttactataaatatagaccttgtatc 21948501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 15295318 - 15295158
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||        || ||||| ||    
T  15295318 cgtatgaagaacgatttgatgcaaatatattttgaaagcgaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaatgtatcttc 15295219  T
Q  200 agtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    |||||| |||||||||| |||||||||||||||| ||  ||||||||||||||||||||||    
T  15295218 agtgtggtattcgttcctaatttatgagttatatgtttactataaatatagaccttgtatc 15295158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 27339605 - 27339445
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaagg-agnnnnnnngaacgtatcat 198  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |        ||||||||| |    
T  27339605 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggaaaaaaaaaagaacgtatctt 27339506  T
Q  199 cagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtat 258  Q
    ||||||| |||| ||||||||||||||||||||| |||  |||||||||||||||||||||    
T  27339505 cagtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtat 27339445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 47906077 - 47906235
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||        || ||||| ||    
T  47906077 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcattgaaggagaaaaaa--aaagtatcttc 47906174  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  47906175 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 47906235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 24325468 - 24325627
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||        || ||||| |     
T  24325468 cgtatgaagaacgatttgatgcaaatatattttgaaagtgaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aatgtatcttt 24325566  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  24325567 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 24325627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 100 - 258
Target Start/End: Original strand, 39931883 - 39932041
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||        |||||||| ||    
T  39931883 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatacttttgatgcaaatattcttttattgaaggagaaaaaaa-aacgtatcttc 39931981  T
Q  200 agtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtat 258  Q
    |||||  ||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  39931982 agtgtagtattcgttccaaatttatgagttatatgtttactataaatatagaccttgtat 39932041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 26520580 - 26520428
Alignment:
Q  113 atttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag------nnnnnnngaacgtatcatcagtgtga 206  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||              || ||||| |||||||||    
T  26520580 atttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcaccgaagaagaaaaaaacaaaagaaatgtatcttcagtgtga 26520481  T
Q  207 tattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  26520480 tattcgttccaaatttataagttatatttctctataaatatagactttgtatc 26520428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 9459892 - 9459733
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||        |||||||| ||    
T  9459892 cgtatgaagaacaatttaatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcattgaaggagaaaaaaa-aacgtatcttc 9459794  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    | |||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  9459793 attgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 9459733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 9463719 - 9463560
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| || |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||        |||||||| ||    
T  9463719 cgtatgaagaacaatttaatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcattgaaggagaaaaaaa-aacgtatcttc 9463621  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    | |||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  9463620 attgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 9463560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 113 - 299
Target Start/End: Complemental strand, 28998710 - 28998529
Alignment:
Q  113 atttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattcg 212  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        | |||||  | |||||| ||||||    
T  28998710 atttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaccgtatatttagtgtggtattcg 28998611  T
Q  213 ttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||| |||  |||||||||||||| ||| |||        ||||||| |||||||||||| |||||||||||    
T  28998610 ttccaaatttatgagttatacttttactataaatatagactttgaatc------agagtaaactttgagatagaggaggctgaaacaa 28998529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 113 - 299
Target Start/End: Complemental strand, 29004426 - 29004245
Alignment:
Q  113 atttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattcg 212  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        | |||||  | |||||| ||||||    
T  29004426 atttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaccgtatatttagtgtggtattcg 29004327  T
Q  213 ttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||| |||  |||||||||||||| ||| |||        ||||||| |||||||||||| |||||||||||    
T  29004326 ttccaaatttatgagttatacttttactataaatatagactttgaatc------agagtaaactttgagatagaggaggctgaaacaa 29004245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 101 - 259
Target Start/End: Complemental strand, 2510801 - 2510638
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag----nnnnnnngaacgtatc 196  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||            |||||||     
T  2510801 gtatgaagaacgatttgatgcaaatatattttgaaagagaatattatatttttgatgcaaatattctttcactgaaggagggaaagaaaaaaaacgtatt 2510702  T
Q  197 atcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
     |||||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  2510701 ttcagtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 2510638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 27337411 - 27337253
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||         |||||||| ||    
T  27337411 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttaactgaagga-aaaaaaaaaacgtatcttc 27337313  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtat 258  Q
      |||| |||| |||||||||||||| |||||| |||  |||||||||||||||||||||    
T  27337312 gatgtggtatttgttccaaatttatgcgttatacttttactataaatatagaccttgtat 27337253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 2949682 - 2949617
Alignment:
Q  112 gatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaag 177  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  2949682 gatttgatgcaaatatattttgaaagggaatattatatttttgatacaaatattctttcactgaag 2949617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 48664973 - 48665050
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaag 177  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  48664973 cgtatgaagaacgatttgatgcacatatattttgaaagggaatattatatttttgatgcaaatattctttcattgaag 48665050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 6115596 - 6115532
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatat 164  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6115596 cgtatgaatgacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatat 6115532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 45693903 - 45693834
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattcttt 169  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  45693903 cgtatgaagaacgatttgatgcaaatatattttgaaagagaataatatattttttatgcaaatattcttt 45693834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 4131760 - 4131690
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttca 171  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4131760 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattata-ttttgatgcaaatattctttca 4131690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 14352875 - 14352945
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||||||| |||| |||||||| |||||||||||| |||||||||||||||||||||| ||| | ||||||    
T  14352875 aacgtatcttcagcgtgatatttgttccaaatttacgagttatatttctctataaatacagatcatgtatc 14352945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 16561373 - 16561439
Alignment:
Q  193 tatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||    
T  16561373 tatcttcagcgtgatatccgtttcaaatttatgagttatatttctctataaatataaaccttatatc 16561439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 6996175 - 6996221
Alignment:
Q  131 ttgaaagggaatattatattttttatgcaaatattctttcactgaag 177  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||    
T  6996175 ttgaaagggaatattatatttttgttgcaaatattctttcactgaag 6996221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 48665071 - 48665138
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttg 255  Q
    |||||||| |||||||  |||| ||||||||||||||||||||| |||  ||||||||||||||||||    
T  48665071 aacgtatcttcagtgtagtatttgttccaaatttatgagttatacttttactataaatatagaccttg 48665138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 10115695 - 10115741
Alignment:
Q  193 tatcatcagtgtgatattcgttccaaatttatgagttatatttctct 239  Q
    |||| |||| ||||||| |||||||||||||||||||||||||||||    
T  10115695 tatcttcagcgtgatatccgttccaaatttatgagttatatttctct 10115741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 32260960 - 32261014
Alignment:
Q  202 tgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgt 256  Q
    ||||| || |||| |||||||| |||||||||||||||||||||||||| |||||    
T  32260960 tgtgacatccgtttcaaatttacgagttatatttctctataaatatagatcttgt 32261014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 11693625 - 11693580
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatatt 145  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  11693625 cgtatgaaggaagatttgatgcaaatatatttttaaagggaatatt 11693580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 14352797 - 14352842
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatatt 145  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  14352797 cgtatgaaggaagatttgatgcaaatatatttttaaagggaatatt 14352842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 17318858 - 17318898
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  17318858 ttgtatcatagtaaaccttgagatagagggggctgaaacaa 17318898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 25248830 - 25248790
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  25248830 ttgtatcagagtaaaccttgagatagagggggctgaaacaa 25248790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 25251591 - 25251551
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  25251591 ttgtatcagagtaaaccttgagatagagggggctgaaacaa 25251551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 49495515 - 49495475
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  49495515 ttgtatcagagtaaaccttgagatagagggggctgaaacaa 49495475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 235
Target Start/End: Complemental strand, 13785611 - 13785580
Alignment:
Q  204 tgatattcgttccaaatttatgagttatattt 235  Q
    ||||||||||||||||||||||||||||||||    
T  13785611 tgatattcgttccaaatttatgagttatattt 13785580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 2949594 - 2949507
Alignment:
Q  207 tattcgttccaaatttatgagttatatttct-ctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||| || | | |||||||||||  ||| |||      | || |||||||||||||||||||||||||||||    
T  2949594 tattcgttccaaatttatgagttatacttttacaataaatatagatattgaatc------cgagaaaaccttgagatagagggggctgaaacaa 2949507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 6996063 - 6995976
Alignment:
Q  207 tattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||| |||   ||||||||||||||||| |||        |||||| ||||||||||||||||| |||||||    
T  6996063 tattcgttccaaatttatgagttatacttttattataaatatagaccttgaatc------agagtaaatcttgagatagagggggccgaaacaa 6995976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 11457781 - 11457751
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  11457781 gtaaaccttgagatagagggggctgaaacaa 11457751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 18307084 - 18307114
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  18307084 gtaaaccttgagatagagggggctgaaacaa 18307114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 31423180 - 31423150
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  31423180 gtaaaccttgagatagagggggctgaaacaa 31423150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 50079127 - 50079097
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  50079127 gtaaaccttgagatagagggggctgaaacaa 50079097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 13785707 - 13785662
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatatt 145  Q
    ||||| ||||| ||||||||||||||||||||| ||| ||||||||    
T  13785707 cgtatgaaggaagatttgatgcaaatatatttttaaaaggaatatt 13785662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 38925795 - 38925754
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  38925795 cttgtatcagagtaaactttgagatagagggggctgaaacaa 38925754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 6997359 - 6997395
Alignment:
Q  131 ttgaaagggaatattatattttttatgcaaatattct 167  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  6997359 ttgaaagagaatattatatttttgatgcaaatattct 6997395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 31425335 - 31425295
Alignment:
Q  260 ttgtatcaa-gtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  31425335 ttgtatcaatgtaaaccttgagataaagggggctgaaacaa 31425295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 19705044 - 19704883
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag--nnnnnnngaacgtatca 197  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||     
T  19705044 cgtatgaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagaaaaaaaagaaacgtatct 19704945  T
Q  198 tcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19704944 taagtgtgatattcgttccaaatttatgagttatatttcactataaatatagaccttgtatc 19704883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 18317872 - 18318029
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| ||    
T  18317872 cgtatgaaggaagatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 18317971  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgt 256  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  18317972 agtgtggtattcgttccaaatttatgagttatactttcactataaatatagaccttgt 18318029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 12195983 - 12195789
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||| ||| ||    
T  12195983 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgaatcttc 12195884  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||       ||| |||| |||||||||||||||||||||||    
T  12195883 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc------aaagcaaactttgagatagagggggctgaaaca 12195790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 295
Target Start/End: Original strand, 17011905 - 17012080
Alignment:
Q  108 ggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |         |||||||| |||| |||||    
T  17011905 ggacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaaaa------aaaaacgtatcttcagagtgat 17011998  T
Q  208 attcgttccaaatttatgagttatatttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaa 295  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| |||||    
T  17011999 gttcgttccaaatttatgagttatatttctctataaatatagaccttgtatc------ggagtaaaccttgagatagaggggtctgaa 17012080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 2629358 - 2629198
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  2629358 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggaggaaaaaaaaacgtatcttc 2629259  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||  |||| ||||||||||||| ||||||| |||  ||||||||||||||||||||||    
T  2629258 agtgtagtatttgttccaaatttattagttatacttttactataaatatagaccttgtatc 2629198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 30035075 - 30034915
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||        |||||||| ||    
T  30035075 cgtatgaagaacgatttaatgcaaatatattttgaaagggaatattatatttttgatgcagatattctttcactgaaggagaaaataaaaacgtatcttc 30034976  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    | ||||||||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  30034975 aatgtgatatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 30034915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 256
Target Start/End: Complemental strand, 26933037 - 26932881
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||| ||| ||    
T  26933037 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgaatcttc 26932939  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgt 256  Q
    |||||| |||| |||||||||||||| |||||| |||| |||||||||||||||||||    
T  26932938 agtgtggtatttgttccaaatttatgggttatactttcactataaatatagaccttgt 26932881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 30967045 - 30967203
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatca 200  Q
    |||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||        |||| ||| |||    
T  30967045 gtatgaagaacgatttaatgcaaatatattttgaaagcgaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgaatcttca 30967144  T
Q  201 gtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtat 258  Q
    ||||| |||| ||||||||||||||||||||| |||  |||||||||||||||||||||    
T  30967145 gtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtat 30967203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 5275807 - 5275727
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag 180  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5275807 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggag 5275727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 113 - 299
Target Start/End: Original strand, 17852400 - 17852582
Alignment:
Q  113 atttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag--nnnnnnngaacgtatcatcagtgtgatatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||          || ||||| || ||||| ||||    
T  17852400 atttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattatttcactgaaagagaagaaaaaaaaaagtatcttc-gtgtggtatt 17852498  T
Q  211 cgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||| |||  |||||||||||||| ||| |||        ||||||||||||||||||||||||||||||||    
T  17852499 cgttccaaatttatgagttatacttttactataaatatagactttgaatc------agagtaaaccttgagatagagggggctgaaacaa 17852582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 22858403 - 22858263
Alignment:
Q  112 gatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaa-cgtatcatcagtgtgatatt 210  Q
    |||| ||||||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||       ||| |||||| |||  |||||||     
T  22858403 gattagatgcaaatatattttgaaagggaat--------tttgatgcaaatattctttcattgaaggagaaaaaaagaaacgtatcttcaacgtgatata 22858312  T
Q  211 cgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22858311 cgttccaaatttatgagttatatttctctataaatataaaccttgtatc 22858263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 15719632 - 15719694
Alignment:
Q  238 ctataaatatagaccttgtatcttgtatcaag-taaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||| || |||||| |||||||||  ||||||||||||||||||||||||||||||    
T  15719632 ctataaatatatacattgtatattgtatcaatataaaccttgagatagagggggctgaaacaa 15719694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 30729145 - 30729102
Alignment:
Q  257 atcttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  30729145 atcttgtatcagagtaaaccttgagatagagggggctgaaacaa 30729102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 20526746 - 20526800
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataa 243  Q
    |||| ||| ||| ||||||||||||||||||||||  ||||||||||||||||||    
T  20526746 aacgcatcttcaatgtgatattcgttccaaatttacaagttatatttctctataa 20526800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 32447630 - 32447590
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  32447630 ttgtatcagagtaaaccttgagatagagggggctgaaacaa 32447590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 13057204 - 13057234
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  13057204 gtaaaccttgagatagagggggctgaaacaa 13057234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 22490649 - 22490679
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  22490649 gtaaaccttgagatagagggggctgaaacaa 22490679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 24338752 - 24338722
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  24338752 gtaaaccttgagatagagggggctgaaacaa 24338722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 25477284 - 25477314
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  25477284 gtaaaccttgagatagagggggctgaaacaa 25477314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 1856 - 2013
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| ||    
T  1856 cgtatgaaggaagatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 1955  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgt 256  Q
    |||||| |||||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  1956 agtgtggtattcgttccaaatttataagttatactttcactataaatatagaccttgt 2013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 13099944 - 13099750
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  13099944 cgtatgaagaacgatttgatacaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 13099845  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    |||||| |||||||||||||||||||||||||| |||  |||||||||||||||||| |||       |||||||||||||||||||||||| |||||||    
T  13099844 agtgtggtattcgttccaaatttatgagttatacttttactataaatatagaccttgaatc------aaagtaaaccttgagatagagggggttgaaaca 13099751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 7094894 - 7094734
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||        |||||||| ||    
T  7094894 cgtatgaagaacgatttgatgcaaatatattttgaaaggaaatattatattttttatgcaaatattctttcactgaaggaggaaaaaaaaacgtatcttc 7094795  T
Q  200 agtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    |||||| ||||||||||||||||||||||||||| ||   |||||||||||||||||||||    
T  7094794 agtgtggtattcgttccaaatttatgagttatatgtttattataaatatagaccttgtatc 7094734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 7092647 - 7092487
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |  ||||| ||    
T  7092647 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggaggaaaaaaaattgtatcttc 7092548  T
Q  200 agtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    |||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  7092547 agtgtggtattcgttccaaatttatgagttatatgtttactataaatatagaccttgtatc 7092487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 18345358 - 18345518
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  18345358 cgtatgaagaacgatttgatgcaaatatattttgaaatggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 18345457  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  18345458 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 18345518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 21989972 - 21990128
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  21989972 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggaggaaaaaaaaacgtatcttc 21990071  T
Q  200 agtgtgatattcgttccaaatttatgagttat-atttctctataaatatagaccttg 255  Q
     ||||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  21990072 tgtgtggtattcgttccaaatttatgagttataattttactataaatatagaccttg 21990128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 38396107 - 38396267
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  38396107 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 38396206  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
     ||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  38396207 ggtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 38396267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 100 - 256
Target Start/End: Original strand, 1849786 - 1849943
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||        |||| ||| ||    
T  1849786 cgtatgaaggacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcagatattctttcactgaaggagaaaaaaaaaacgaatcttc 1849885  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgt 256  Q
    |||||| |||| ||||||||||||||||||||| |||  |||||||||||||||||||    
T  1849886 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgt 1849943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 299
Target Start/End: Complemental strand, 37412583 - 37412402
Alignment:
Q  112 gatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattc 211  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||        |||||||| |||||||| |||||    
T  37412583 gatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattcttccactgaaggagaaaaaaa-aacgtatcttcagtgtgttattc 37412485  T
Q  212 gttccaaatttatgagttatatttct-ctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||        ||||||||| |||||| |||||||||||||||    
T  37412484 gttccaaatttatgagttatatttttactataaatatagaccttgaatc------agagtaaacctggagatatagggggctgaaacaa 37412402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 1606292 - 1606451
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||| ||| ||    
T  1606292 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgaatcttc 1606390  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  1606391 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 1606451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 11757046 - 11757205
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  11757046 cgtatgaagaactatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 11757144  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  11757145 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 11757205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 20299276 - 20299435
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  20299276 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 20299374  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| |||||| |||||||||||||| |||  ||||||||||||||||||||||    
T  20299375 agtgtggtatttgttccatatttatgagttatacttttactataaatatagaccttgtatc 20299435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 3677099 - 3677257
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaag--gagnnnnnnngaacgtatca 197  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||        ||||||||     
T  3677099 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagagaaaaaaaaaacgtatct 3677198  T
Q  198 tcagtgtgatattcgttccaaatttatgagttatatttct-ctataaatatagaccttg 255  Q
    |||||||||||||||||||||||||||||||||| ||| | ||||||||||||| ||||    
T  3677199 tcagtgtgatattcgttccaaatttatgagttatgtttttactataaatatagatcttg 3677257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 28485382 - 28485543
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnnga-acgtatcat 198  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||        | ||||||| |    
T  28485382 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcaccgaaggaggaaaaaaaacacgtatctt 28485481  T
Q  199 cagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    ||||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  28485482 cagtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 28485543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 31156379 - 31156185
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||| ||| ||    
T  31156379 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgaatcttc 31156280  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    |||||| |||| |||||||||||||||| |||| |||  ||||||||||||| ||||||||       | | |||| |||||||||||||||||||||||    
T  31156279 agtgtggtatttgttccaaatttatgagctatacttttactataaatatagagcttgtatc------aaggcaaactttgagatagagggggctgaaaca 31156186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 20625855 - 20626015
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||        |||||||| ||    
T  20625855 cgtatgaagaacgatttgatacaaatatattttgaaagggaatattatatttttgatgcaaatattttttcactgaaggagcaaaaaaaaacgtatcttc 20625954  T
Q  200 agtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    |||||| ||||||||||||||||||||||||||| ||   |||||||||||||||| ||||    
T  20625955 agtgtggtattcgttccaaatttatgagttatatgtttattataaatatagaccttctatc 20626015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 20629746 - 20629906
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||        |||||||| ||    
T  20629746 cgtatgaagaacgatttgatacaaatatattttgaaagggaatattatatttttgatgcaaatattttttcactgaaggagcaaaaaaaaacgtatcttc 20629845  T
Q  200 agtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    |||||| ||||||||||||||||||||||||||| ||   |||||||||||||||| ||||    
T  20629846 agtgtggtattcgttccaaatttatgagttatatgtttattataaatatagaccttctatc 20629906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 20642165 - 20642325
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||        |||||||| ||    
T  20642165 cgtatgaagaacgatttgatacaaatatattttgaaagggaatattatatttttgatgcaaatattttttcactgaaggagcaaaaaaaaacgtatcttc 20642264  T
Q  200 agtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    |||||| ||||||||||||||||||||||||||| ||   |||||||||||||||| ||||    
T  20642265 agtgtggtattcgttccaaatttatgagttatatgtttattataaatatagaccttctatc 20642325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 28487382 - 28487530
Alignment:
Q  112 gatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattc 211  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| |||||||| ||||     
T  28487382 gatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttcagtgtggtattt 28487481  T
Q  212 gttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||| |||||||||||||||| |||  ||||||||||||||| ||||||    
T  28487482 gttctaaatttatgagttatacttttcctataaatatagaccatgtatc 28487530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 38393804 - 38393963
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |        |||||||| ||    
T  38393804 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatgttatatttttgatgcaaatattctttcactgaaggtgaaaaaat-aacgtatcttc 38393902  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  38393903 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 38393963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 7472443 - 7472292
Alignment:
Q  110 acgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag-nnnnnnngaacgtatcatcagtgtgata 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||         |||||||| |||||||| ||    
T  7472443 acgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcattgaaggagaaaaaaaaaaacgtatcttcagtgtggta 7472344  T
Q  209 ttcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    || |||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  7472343 tttgttccaaatttatgagttatatgtttactataaatatagaccttgtatc 7472292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 43253994 - 43253832
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag--nnnnnnngaacgtatca 197  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         ||| |||||     
T  43253994 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaataagaaagtatct 43253895  T
Q  198 tcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    || ||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  43253894 tcggtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 43253832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 7349736 - 7349587
Alignment:
Q  110 acgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatat 209  Q
    |||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||        |||||||| ||||||||||||    
T  7349736 acgatttgatgcaaatatattttgaaagagaatattatatttttgaggcaaatattctttcactgaatgagaaaaaaa-aacgtatcttcagtgtgatat 7349638  T
Q  210 tcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    | ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  7349637 ttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 7349587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 7352115 - 7351966
Alignment:
Q  110 acgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||        |||||||| ||||||||||||    
T  7352115 acgatttgatgcaaatatattttgaaagggaatattatatttttgaggcaaatattctttcactgaatgagaaaaaaa-aacgtatcttcagtgtgatat 7352017  T
Q  210 tcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    | ||||||||||||||||||||| |||  ||||||||||| ||||||||||    
T  7352016 ttgttccaaatttatgagttatacttttactataaatataaaccttgtatc 7351966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 3035548 - 3035698
Alignment:
Q  112 gatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag--nnnnnnngaacgtatcatcagtgtgatat 209  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          |||||||| ||||| || |||    
T  3035548 gatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaagaaaaaaaacgtatcttcagtatggtat 3035647  T
Q  210 tcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    | ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  3035648 ttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 3035698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 7470500 - 7470334
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag------nnnnnnngaacgt 193  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||              |||||    
T  7470500 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcattgaaggagaaaagaaaaaaaaaaacgt 7470401  T
Q  194 atcatcagtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    ||| |||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  7470400 atcttcagtgtggtattcgttccaaatttatgagttatatgtttactataaatatagaccttgtatc 7470334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 101 - 299
Target Start/End: Original strand, 24258280 - 24258478
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag-----nnnnnnngaacgtat 195  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||             || ||||    
T  24258280 gtatgaaggacgatt-gatgcaaatatattttgaaagggaatattatatttttgatgtaaatattctttcactgaaggagaaaaaaataaagaaatgtat 24258378  T
Q  196 catca--gtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatcttgtatca-agtaaaccttgagatagagggggct 292  Q
    | |||  |||||||||||||||||||||||||||||||||||||||||||||||||        | |||||||| ||||||| |||||||||||||||||    
T  24258379 cttcagtgtgtgatattcgttccaaatttatgagttatatttctctataaatatag-------gttttgtatcagagtaaacattgagatagagggggct 24258471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 20297180 - 20297339
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||        |||||||| ||    
T  20297180 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcaccgaaggagaaaaaaa-aacgtatcttc 20297278  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| |||||||||||| |||||||| |||  ||| |||||| |||||||||||    
T  20297279 agtgtggtatttgttccaaatttacgagttatacttttactaaaaatatggaccttgtatc 20297339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 42331472 - 42331273
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag-----nnnnnnngaacgta 194  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||             ||||||    
T  42331472 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcattgaaggagaaagaaaaaaaaaaacgta 42331373  T
Q  195 tcatcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctg 293  Q
    || | |||||| |||||||||||||||||||||||||| |||  |||||||||||||| |||||||        | ||||| ||||||||||||||||||    
T  42331372 tctttagtgtggtattcgttccaaatttatgagttatacttttactataaatatagactttgtatc------agactaaactttgagatagagggggctg 42331279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 248
Target Start/End: Complemental strand, 21470762 - 21470614
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  21470762 cgtatgaagaacgatttgatgcgaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 21470664  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatata 248  Q
     ||||| |||| ||||||||||||||||||||| |||  |||||||||||    
T  21470663 ggtgtggtatttgttccaaatttatgagttatacttttactataaatata 21470614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 47865449 - 47865528
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaagga 179  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47865449 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaagga 47865528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 40281755 - 40281688
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgt 256  Q
    |||||||| |||| |||||||  |||||||||||||||||||||||||| |||||||||| |||||||    
T  40281755 aacgtatcttcagcgtgatatctgttccaaatttatgagttatatttctttataaatataaaccttgt 40281688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 10691026 - 10691083
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaata 246  Q
    |||||||| || |||||||||  |||||||||| ||||||||||||||||||||||||    
T  10691026 aacgtatcttcggtgtgatatctgttccaaattcatgagttatatttctctataaata 10691083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 443505 - 443610
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagg 287  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| |||  |||||||||||||| ||| |||        ||||||||||||||||||||    
T  443505 aacgtatcttcagtgtggaattcgttccaaatttatgagttatacttttactataaatatagactttgaatc------agagtaaaccttgagatagagg 443598  T
Q  288 gggctgaaacaa 299  Q
    | ||| ||||||    
T  443599 gagctaaaacaa 443610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 7188518 - 7188558
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  7188518 ttgtatcagagtaaaccttgagatagagggggctgaaacaa 7188558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 20137423 - 20137383
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  20137423 ttgtatcagagtaaaccttgagatagagggggctgaaacaa 20137383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 21678041 - 21678081
Alignment:
Q  260 ttgtatcaa-gtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  21678041 ttgtatcaatgtaaaccttgagatagagggggctgaaacaa 21678081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Complemental strand, 22828938 - 22828907
Alignment:
Q  268 agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||||||||||||||||||||||||    
T  22828938 agtaaaccttgagatagagggggctgaaacaa 22828907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 4296239 - 4296209
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  4296239 gtaaaccttgagatagagggggctgaaacaa 4296209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 11355243 - 11355273
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  11355243 gtaaaccttgagatagagggggctgaaacaa 11355273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 21680012 - 21680042
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  21680012 gtaaaccttgagatagagggggctgaaacaa 21680042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 24465534 - 24465564
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  24465534 gtaaaccttgagatagagggggctgaaacaa 24465564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 22392447 - 22392488
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  22392447 cttgtatcagagtaaactttgagatagagggggctgaaacaa 22392488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 27306544 - 27306503
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  27306544 cttgtatcagagtaaactttgagatagagggggctgaaacaa 27306503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 296
Target Start/End: Complemental strand, 20091846 - 20091818
Alignment:
Q  268 agtaaaccttgagatagagggggctgaaa 296  Q
    |||||||||||||||||||||||||||||    
T  20091846 agtaaaccttgagatagagggggctgaaa 20091818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 100 - 299
Target Start/End: Original strand, 1313203 - 1313395
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        || ||||| |     
T  1313203 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaa--aaagtatcttt 1313300  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||        |||||||||||||||||||||||||||||||    
T  1313301 agtgtgatattcgttccaaatttatgagttatacttttactataaatatagaccttgaatc------agagtaaaccttgagatagagggggctgaaaca 1313394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 458071 - 458231
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  458071 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 458170  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  458171 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 458231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 27636091 - 27635899
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        || ||||| ||    
T  27636091 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaa---aatgtatcttc 27635995  T
Q  200 agtgtgatattcgttccaaatttatgagttatatttct--ctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaac 297  Q
    |||||| ||||||||||||||||||||||||||||| |  ||| |||||||||||||| ||      |  ||||||||||||||||||||||||||||||    
T  27635994 agtgtggtattcgttccaaatttatgagttatattttttactacaaatatagaccttgaat------tagagtaaaccttgagatagagggggctgaaac 27635901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 4104362 - 4104205
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||   |||    
T  4104362 cgtatgaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagaaaaaaaaaacgt---atc 4104266  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  4104265 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 4104205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 53915961 - 53915768
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| |     
T  53915961 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttg 53915863  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    |||||| |||||||||||||||||||||||||| |||  |||||||||||||||||| |||        |||||||||| ||||||||||||||||||||    
T  53915862 agtgtggtattcgttccaaatttatgagttatacttttactataaatatagaccttgaatc------agagtaaaccttaagatagagggggctgaaaca 53915769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 455694 - 455854
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  455694 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 455793  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||| | |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  455794 agtgcggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 455854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 746543 - 746702
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  746543 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 746641  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  746642 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 746702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 10622006 - 10621848
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  10622006 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaa--aacgtatcttc 10621909  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  10621908 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 10621848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 25533228 - 25533385
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  25533228 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaa---aacgtatcttc 25533324  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    ||||||||||| |||| |||||||||||||||| |||  ||||||||||||||||||||||    
T  25533325 agtgtgatatttgttctaaatttatgagttatacttttactataaatatagaccttgtatc 25533385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 42990073 - 42990233
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||        || ||||| ||    
T  42990073 cgtatgaagaacgatttgatgcaaatatattttgaaagagaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaatgtatcttc 42990172  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  42990173 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 42990233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 53918129 - 53917936
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||        |||||||| ||    
T  53918129 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcattgaaggagaaaaaaa-aacgtatcttc 53918031  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    |||||| |||||||| ||||||||||||||||| |||  |||||||||||||||||| |||        | ||||||||||||| |||||||||||||||    
T  53918030 agtgtggtattcgtttcaaatttatgagttatacttttactataaatatagaccttgaatc------agattaaaccttgagatggagggggctgaaaca 53917937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 42992075 - 42992233
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatca 200  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| |||    
T  42992075 gtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttca 42992173  T
Q  201 gtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||| |||||  |||||||||||||||||||| |||  ||||||||||| ||||||||||    
T  42992174 gtgtaatattaattccaaatttatgagttatacttttactataaatatataccttgtatc 42992233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 112 - 299
Target Start/End: Original strand, 51943175 - 51943356
Alignment:
Q  112 gatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattc 211  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||        |||||||| |||||||| |||||    
T  51943175 gatttgatgcaaatatattttgaaagggaatattatatttttgatgtaaatattctttcattgaaggagaaagaaa-aacgtatcttcagtgtggtattc 51943273  T
Q  212 gttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||| |||        ||||||||| ||||||||||| ||||||||||    
T  51943274 gttccaaatttatgatttatacttttactataaatatagaccttgaatc------agagtaaacctggagatagagggtgctgaaacaa 51943356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 6561691 - 6561795
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagaggg 288  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  6561691 aacgtatcttcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc------agagtaaaccttgagatagaggg 6561784  T
Q  289 ggctgaaacaa 299  Q
    |||||||||||    
T  6561785 ggctgaaacaa 6561795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 41848925 - 41849093
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag--------nnnnnnngaac 191  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| |||                |||    
T  41848925 cgtatgaagaacgatttgatgcaaatatattttgaaaaggaatattatatttttgatgcaaatattctttaactgaaagagaaaaaaaaaaaaaaaaaac 41849024  T
Q  192 gtatcatcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    ||||| |||||||| |||| ||||||||||||||||||||| |||  |||||||||||||| |||||||    
T  41849025 gtatcttcagtgtggtatttgttccaaatttatgagttatacttttactataaatatagacattgtatc 41849093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 11072830 - 11072896
Alignment:
Q  193 tatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||| |||| ||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  11072830 tatcttcagcgtgatatccgttccaaatttgtgagttatatttctctataaataaagatcttgtatc 11072896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 53973936 - 53973898
Alignment:
Q  217 aaatttatgagttatatttctctataaatatagaccttg 255  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  53973936 aaatttatgagttatatttctctataaatatagatcttg 53973898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 28137607 - 28137567
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  28137607 ttgtatcagagtaaaccttgagatagagggggctgaaacaa 28137567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 1626985 - 1626955
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  1626985 gtaaaccttgagatagagggggctgaaacaa 1626955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 6484340 - 6484370
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  6484340 gtaaaccttgagatagagggggctgaaacaa 6484370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 11066474 - 11066540
Alignment:
Q  193 tatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||| |||| ||||||| |||||||||||| |||||| | |||||||||||||| | | ||||||||    
T  11066474 tatcttcagcgtgatatccgttccaaatttgtgagttctctttctctataaatacaaatcttgtatc 11066540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 24979651 - 24979692
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  24979651 cttgtatcagagtaaactttgagatagagggggctgaaacaa 24979692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 28100353 - 28100313
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  28100353 ttgtatcagagtaacccttgagatagagggggctgaaacaa 28100313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 51675067 - 51675027
Alignment:
Q  260 ttgtatcaa-gtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  51675067 ttgtatcaatgtaaacgttgagatagagggggctgaaacaa 51675027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 100 - 298
Target Start/End: Complemental strand, 11940 - 11748
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  11940 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 11842  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    |||||| |||||||||||||||||||||||||| |||  |||||||||||||||||| |||        ||||||||| |||||||||||||||||||||    
T  11841 agtgtggtattcgttccaaatttatgagttatacttttactataaatatagaccttgaatc------agagtaaacctggagatagagggggctgaaaca 11748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 51830 - 51989
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  51830 cgtataaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 51928  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  51929 agtgtggtattcgttccaaatttatgagttatacttttactataaatatagaccttgtatc 51989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 10586650 - 10586810
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  10586650 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 10586749  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  10586750 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 10586810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 3373509 - 3373349
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||        |||||||| ||    
T  3373509 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattttttcactgaaggagaaaaaaaaaacgtatcttc 3373410  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  3373409 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 3373349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 25803828 - 25803987
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  25803828 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 25803926  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    ||||| ||||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  25803927 agtgtaatatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 25803987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 27910257 - 27910416
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatca 200  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        || ||||| |||    
T  27910257 gtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaaagtatcttca 27910356  T
Q  201 gtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    ||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  27910357 gtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 27910416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 27912350 - 27912501
Alignment:
Q  110 acgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag-nnnnnnngaacgtatcatcagtgtgata 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||         |||||||| |||||||||||    
T  27912350 acgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaaacgtatcttcagtgtgata 27912449  T
Q  209 ttcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    || ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  27912450 tttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 27912501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 100 - 299
Target Start/End: Original strand, 18596458 - 18596652
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||||||||        |||||||| ||    
T  18596458 cgtataaagaacgatttgatgcaaatatattttgaaagagaatattatatttttgatacaaatattctatcactgaaggagaaaaaaaaaacgtatcttc 18596557  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    |||||| |||||||||||||||||||||||||| |||  |||||||||||||||||| |||        ||||||||||| |||||||||||||||||||    
T  18596558 agtgtggtattcgttccaaatttatgagttatacttttactataaatatagaccttgaatc------agagtaaaccttgggatagagggggctgaaaca 18596651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 18466494 - 18466651
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||        || ||||| ||    
T  18466494 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactaaaggagaaaaa---aaagtatcttc 18466590  T
Q  200 agtgtgatattcgttccaaatttatgagttatatttct-ctataaatatagaccttgtatc 259  Q
    |||||| |||| |||||||||||||||||||||||| | ||||||||||||||||||||||    
T  18466591 agtgtggtatttgttccaaatttatgagttatatttttactataaatatagaccttgtatc 18466651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 18468819 - 18468978
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        || ||||| ||    
T  18468819 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaataa-aaagtatcttc 18468917  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  18468918 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 18468978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 15552046 - 15552206
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||        |||||||| ||    
T  15552046 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatatgacatttttgatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 15552145  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    || ||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  15552146 agcgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 15552206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 18509774 - 18509627
Alignment:
Q  112 gatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattc 211  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| |||||||| |||||    
T  18509774 gatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttcagtgtggtattc 18509676  T
Q  212 gttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
     | ||||||||||||||||||| ||  ||||||||||||||||||||||    
T  18509675 atcccaaatttatgagttatatgtttactataaatatagaccttgtatc 18509627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 18511681 - 18511522
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||        |||||||| |     
T  18511681 cgtatgaagaacgatttgatgcaaatatattttgaaaggaaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttt 18511583  T
Q  200 agtgtgatattcgttccaaatttatgagttatat-ttctctataaatatagaccttgtatc 259  Q
    |||||| ||||||||||||||||||||||||||| ||   |||||||||||||||||||||    
T  18511582 agtgtggtattcgttccaaatttatgagttatatgtttaatataaatatagaccttgtatc 18511522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 100 - 296
Target Start/End: Original strand, 26097542 - 26097735
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaa--agggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatca 197  Q
    ||||| ||| ||||||||||||||||||||||||||  ||| ||| |||||||||| ||||||||||||||||||||||||||        || |||||     
T  26097542 cgtatgaagaacgatttgatgcaaatatattttgaagaaggaaatgttatatttttgatgcaaatattctttcactgaaggaggaaaaaaaaatgtatct 26097641  T
Q  198 tcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaa 296  Q
    |||||||| |||||||||||||||||||||||||| |||  |||||||||||||||||| |||        ||||||| |||||||||||||||||||||    
T  26097642 tcagtgtggtattcgttccaaatttatgagttatacttttactataaatatagaccttgaatc------agagtaaactttgagatagagggggctgaaa 26097735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 100 - 296
Target Start/End: Complemental strand, 26098720 - 26098528
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag-nnnnnnngaacgtatcat 198  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||         |||||||| |    
T  26098720 cgtataaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatacaaaaattctttcattgaaggagaaataaaaaaacgtatctt 26098621  T
Q  199 cagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaa 296  Q
    || |||| |||||||||||| ||||||||||||| |||  |||||||||||||||||| |||        ||||||||| |||||||||||||||||||    
T  26098620 caatgtggtattcgttccaattttatgagttatacttttactataaatatagaccttgaatc------agagtaaacctggagatagagggggctgaaa 26098528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 259
Target Start/End: Original strand, 15143309 - 15143458
Alignment:
Q  106 aaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnnga---acgtatcatcagt 202  Q
    ||||| ||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||| ||        |   ||||||| ||||     
T  15143309 aaggaagatttgatgcaaatatattttgaaagggaatatt-------tgatgcaaatattctttcactgaagaaggggaaaaaagaaacgtatcttcagc 15143401  T
Q  203 gtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15143402 gtgatatccgttacaaatttatgagttatatttctctataaatatagaccttgtatc 15143458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 299
Target Start/End: Original strand, 40221340 - 40221527
Alignment:
Q  112 gatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaac-------gtatcatcagtgt 204  Q
    |||||| | |||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||        |||       ||||| |||||||    
T  40221340 gatttgtttcaaatatattttgaaaaggaatattatatttttgatgcaaatattctttcactgcaggagaaggaaaaaacaaaaaacgtatcttcagtgt 40221439  T
Q  205 gatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||| ||||| ||||||||||||||  |||  |||||||||||||| |||  ||        ||||||||||||||||||||||||||||||||    
T  40221440 gatatccgttctaaatttatgagttactttta-ctataaatatagacattgactcag------agtaaaccttgagatagagggggctgaaacaa 40221527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 6661560 - 6661456
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagaggg 288  Q
    |||| ||| ||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||| |    
T  6661560 aacgcatcttcagtgttatatccgtttcaaatttatgagttatatttcactataaatatagaccttgtatc------agagtaaaccttgagatagagag 6661467  T
Q  289 ggctgaaacaa 299  Q
    || ||||||||    
T  6661466 ggttgaaacaa 6661456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 21288651 - 21288713
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaat 162  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  21288651 cgtatgaagaacgattttatgcaaatatattttgaaagggaatattatatttttgatgcaaat 21288713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 299
Target Start/End: Complemental strand, 41586085 - 41585980
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatca-agtaaaccttgagatagag 286  Q
    |||||||| ||||| || |||||||||||||| ||||||||||| |||  ||||||||||||        | |||||||| |||||||||||||||| ||    
T  41586085 aacgtatcttcagtctggtattcgttccaaatctatgagttatacttttactataaatatag-------gttttgtatcagagtaaaccttgagataaag 41585993  T
Q  287 ggggctgaaacaa 299  Q
    |||||||||||||    
T  41585992 ggggctgaaacaa 41585980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 20507779 - 20507736
Alignment:
Q  257 atcttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  20507779 atcttgtatcagagtaaactttgagatagagggggctgaaacaa 20507736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Complemental strand, 34530971 - 34530940
Alignment:
Q  268 agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||||||||||||||||||||||||    
T  34530971 agtaaaccttgagatagagggggctgaaacaa 34530940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 17072858 - 17072888
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  17072858 gtaaaccttgagatagagggggctgaaacaa 17072888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 25904078 - 25904108
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  25904078 gtaaaccttgagatagagggggctgaaacaa 25904108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 296
Target Start/End: Original strand, 36208544 - 36208582
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaa 296  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  36208544 cttgtatcagagtaaaccttgagatagagggggctgaaa 36208582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 2818651 - 2818610
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  2818651 cttgtatcagagtaaactttgagatagagggggctgaaacaa 2818610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 5779035 - 5778979
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaat 245  Q
    |||||||| |||  ||||||| ||||  |||||||||| ||||||||||||||||||    
T  5779035 aacgtatcttcaacgtgatatccgttttaaatttatgaattatatttctctataaat 5778979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 20043027 - 20043055
Alignment:
Q  271 aaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||    
T  20043027 aaaccttgagatagagggggctgaaacaa 20043055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 42770739 - 42770775
Alignment:
Q  260 ttgtatcaagtaaaccttgagatagagggggctgaaa 296  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  42770739 ttgtatcgagtaaaccttgagatagaggggactgaaa 42770775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 14787900 - 14787741
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  14787900 cgtataaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 14787802  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  14787801 agtgtggtattcgttccaaatttatgagttatacttttactataaatatagaccttgtatc 14787741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 101 - 299
Target Start/End: Original strand, 19322562 - 19322756
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag--nnnnnnngaacgtatcat 198  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||          || ||||| |    
T  19322562 gtataaaggacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaagaaatgtatctt 19322661  T
Q  199 cagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatcttgtatca-agtaaaccttgagatagagggggctgaaac 297  Q
    || |||||||||| ||||||||||||||||||||||  |||||||||||||       ||||||||||| ||||||||||||||||||||||| ||||||    
T  19322662 caatgtgatattcattccaaatttatgagttatattcatctataaatatag-------atcttgtatcagagtaaaccttgagatagagggggatgaaac 19322754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 22132866 - 22132707
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  22132866 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 22132768  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  22132767 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 22132707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 22135098 - 22134938
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||        |||||||| ||    
T  22135098 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgattcaaatattctttcactgaaggagaaaaaaaaaacgtatcttc 22134999  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  22134998 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 22134938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 100 - 299
Target Start/End: Original strand, 5100864 - 5101056
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  5100864 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaa--aacgtatcttc 5100961  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    | | || |||||||||||||||||||||||||| |||  |||||||||||||||||| |||  |      ||||||||||||||||||||| ||||||||    
T  5100962 aatctggtattcgttccaaatttatgagttatacttttactataaatatagaccttgaatcagg------gtaaaccttgagatagaggggactgaaaca 5101055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 24348080 - 24348239
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatca 200  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        || ||||| |||    
T  24348080 gtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaaagtatcttca 24348179  T
Q  201 gtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
     |||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  24348180 atgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 24348239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 110 - 259
Target Start/End: Complemental strand, 17662695 - 17662546
Alignment:
Q  110 acgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        || ||||| |||||||| |||    
T  17662695 acgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aaagtatcttcagtgtggtat 17662597  T
Q  210 tcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    | ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  17662596 ttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 17662546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 30136437 - 30136595
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatca 200  Q
    |||| ||| ||||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||| ||||||||        |||||||| |||    
T  30136437 gtatgaagaacgatttgatgcaaatatattttaaaagagaatattatatttttgattcaaatattctttcattgaaggagaaaaaaaaaacgtatcttca 30136536  T
Q  201 gtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||    
T  30136537 gtgtgatattcgttctaaatttattagttatatttctctataaatatatacctagtatc 30136595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 44600307 - 44600112
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaagga-gnnnnnnngaacgtatcat 198  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |        |||| ||| |    
T  44600307 cgtatgaagaacgatttgatgcaaatatattttaaaagggaatattatatttttgatgcaaatattctttcactgaaggaggaaaaaaaaaacgaatctt 44600208  T
Q  199 cagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaac 297  Q
    ||||||| |||| ||| ||||||||||||||||| |||  |||||||||||||||||||||      | ||| |||| ||||||||||||||||||||||    
T  44600207 cagtgtggtatttgtttcaaatttatgagttatacttttactataaatatagaccttgtat------taaagcaaactttgagatagagggggctgaaac 44600114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 100 - 299
Target Start/End: Original strand, 56030310 - 56030503
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||        || ||||| ||    
T  56030310 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttggtgcaaatattctttcactgaaggagaaaaaaa-aaagtatcttc 56030408  T
Q  200 agtgtgatattcgttccaaatttatgagttatatttct-ctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
     ||||| ||||| ||||||||||||||||||||||| | |||||||||||| | |||||||        |||||||||||||||||| ||||||||||||    
T  56030409 ggtgtggtattctttccaaatttatgagttatatttttactataaatataggctttgtatc------agagtaaaccttgagatagaaggggctgaaaca 56030502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 53405001 - 53405152
Alignment:
Q  110 acgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag-nnnnnnngaacgtatcatcagtgtgata 208  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||         |||||||  |||||||| ||    
T  53405001 acgatttgatgcaaatatattttgaaaggaaaaattatatttttgatgcaaatattctttcactaaaggagaaaaaaaaaaacgtattttcagtgtggta 53405100  T
Q  209 ttcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    || ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  53405101 tttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 53405152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 38890597 - 38890517
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaaggg-aatattatattttttatgcaaatattctttcactgaaggag 180  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||    
T  38890597 gtatgaaggacgatttgatgcaaatatattttgaaagggaaatattatatttttgatgcaaatattctttcactaaaggag 38890517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 47211160 - 47211054
Alignment:
Q  154 tatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagacc 252  Q
    |||||||||||||||||||||||||||        |||||||| |||||||| |||| ||||||||||||||||||||| |||  |||||||||||||||    
T  47211160 tatgcaaatattctttcactgaaggagaaaaaaaaaacgtatcttcagtgtggtatttgttccaaatttatgagttatacttttactataaatatagacc 47211061  T
Q  253 ttgtatc 259  Q
    |||||||    
T  47211060 ttgtatc 47211054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 9022192 - 9022332
Alignment:
Q  112 gatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattc 211  Q
    ||||||||||||||||||||| ||||||||||||       | ||||||||||||||||||| |||||         || ||||| |||  ||||||| |    
T  9022192 gatttgatgcaaatatattttaaaagggaatatt-------tgatgcaaatattctttcactaaaggaataaaaaaaaatgtatcttcaacgtgatatcc 9022284  T
Q  212 gttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
     ||||||||||||| |||||||||||||||||||||| ||||||||||    
T  9022285 attccaaatttatgtgttatatttctctataaatataaaccttgtatc 9022332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 18709550 - 18709480
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtat 258  Q
    |||||||| |||||||| |||| ||||||||||||||||||||| |||  |||||||||||||||||||||    
T  18709550 aacgtatcttcagtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtat 18709480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 54929053 - 54928983
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||| ||| |||| |||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||    
T  54929053 aacgcatcttcagcgtgatattcgtttcaaatttacgagttatatttctctataactataaaccttgtatc 54928983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 29609822 - 29609767
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatat 247  Q
    |||||||| |||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  29609822 aacgtatc-tcagcgtgatattcgttccaaatttatgagt--tatttctctataaatat 29609767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 9863700 - 9863733
Alignment:
Q  226 agttatatttctctataaatatagaccttgtatc 259  Q
    ||||||||||||||||||||||||||||||||||    
T  9863700 agttatatttctctataaatatagaccttgtatc 9863733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 32274263 - 32274203
Alignment:
Q  200 agtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatct 260  Q
    |||||||||| |||||||| |||| ||||||||||| | |||||||| ||| |||||||||    
T  32274263 agtgtgatatccgttccaagtttacgagttatatttttatataaatacagatcttgtatct 32274203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 33415801 - 33415761
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  33415801 ttgtatcagagtaaaccttgagatagagggggctgaaacaa 33415761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 37313372 - 37313340
Alignment:
Q  267 aagtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||||    
T  37313372 aagtaaaccttgagatagagggggctgaaacaa 37313340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 10112743 - 10112896
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||||| ||||||||| |||||||||| ||||| |||||||       | ||||||||||| ||||||| ||||||        || ||||| ||    
T  10112743 cgtatgaaggaagatttgatgtaaatatattt-gaaagagaatatt-------tgatgcaaatattatttcactaaaggagaaaaaaaaaatgtatcttc 10112834  T
Q  200 agtgtgatattcgttccaaatttatgagttata--tttctctataaatatagaccttgtatc 259  Q
    || |||| || ||||||||||||||||||||||  ||| | ||||||||||||| |||||||    
T  10112835 agcgtgaaatccgttccaaatttatgagttatatttttttttataaatatagacattgtatc 10112896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 23001742 - 23001703
Alignment:
Q  206 atattcgttccaaatttatgagttatatttctctataaat 245  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  23001742 atatccgttccaaatttacgagttatatttctctataaat 23001703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 38209044 - 38208989
Alignment:
Q  204 tgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||||| | ||||| ||||||||||||||||||| |||||||||| || |||||||    
T  38209044 tgatatccattccagatttatgagttatatttctttataaatataaactttgtatc 38208989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Complemental strand, 38928483 - 38928452
Alignment:
Q  268 agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||||||||||||||||||||||||    
T  38928483 agtaaaccttgagatagagggggctgaaacaa 38928452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 19095911 - 19095941
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  19095911 gtaaaccttgagatagagggggctgaaacaa 19095941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 24446883 - 24446853
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  24446883 gtaaaccttgagatagagggggctgaaacaa 24446853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 40091744 - 40091689
Alignment:
Q  238 ctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||    
T  40091744 ctataaatatagaccttgtatca------aagtaaactttgagatagagggggctgaaacaa 40091689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 619762 - 619721
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  619762 cttgtatcagagtaaactttgagatagagggggctgaaacaa 619721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 22801177 - 22801136
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  22801177 cttgtatcagagtaaactttgagatagagggggctgaaacaa 22801136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 22803049 - 22803008
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  22803049 cttgtatcagagtaaactttgagatagagggggctgaaacaa 22803008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 48486337 - 48486378
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  48486337 cttgtatcagagtaaactttgagatagagggggctgaaacaa 48486378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 296
Target Start/End: Complemental strand, 18535134 - 18535106
Alignment:
Q  268 agtaaaccttgagatagagggggctgaaa 296  Q
    |||||||||||||||||||||||||||||    
T  18535134 agtaaaccttgagatagagggggctgaaa 18535106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 18537788 - 18537748
Alignment:
Q  257 atcttgtatca-agtaaaccttgagatagagggggctgaaa 296  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  18537788 atcttgtatcagagtaaacattgagatagagggggctgaaa 18537748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 41997511 - 41997551
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  41997511 ttgtatcagagtaaaccttgagataaagggggctgaaacaa 41997551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 608591 - 608753
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag---nnnnnnngaacgtatc 196  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||          |||||||||    
T  608591 cgtatgaaggacgatttgatgcaaatatattttgaaagagaatattatatattttatgcaaatattctttcactgaaggagaaaaaaaaaagaacgtatc 608690  T
Q  197 atcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
     || |||||||||| ||||||||||||||||||||||||| || |||||||||||||| ||||    
T  608691 ttcggtgtgatatttgttccaaatttatgagttatatttcactgtaaatatagaccttatatc 608753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 15809083 - 15809242
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  15809083 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 15809181  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  15809182 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 15809242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 110 - 299
Target Start/End: Original strand, 41382550 - 41382734
Alignment:
Q  110 acgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatat 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||        |||||||| |||||||| |||    
T  41382550 acgatttgatgcaaatatattttgaaaggaaatattatattttttatgcaaatattctttcactgaatgagaaaaaaaaaacgtatcttcagtgtggtat 41382649  T
Q  210 tcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||| |||        |||||||||||||||||| |||||| ||||||    
T  41382650 tcgttccaaatttatgagttatacttttactataaatatagaccttgaatc------agagtaaaccttgagatagatggggctaaaacaa 41382734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 28283692 - 28283533
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||    
T  28283692 cgtatgaagaacgatttgatgcaaatatattttgaaagtgaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgtatcttc 28283594  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    ||||| ||||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  28283593 agtgtaatatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 28283533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 43529993 - 43530151
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatca 200  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        || ||||| |||    
T  43529993 gtatgaagaacgatttgatgcaaatatattttgaaagggaatattatattttttatgctaatattctttcactgaaggagaaaaaaa-aaagtatcttca 43530091  T
Q  201 gtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    ||||| ||||  |||||||||||||||||||| |||  ||||||||||||||||||||||    
T  43530092 gtgtggtatttattccaaatttatgagttatacttttactataaatatagaccttgtatc 43530151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 41384614 - 41384768
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||         |||||||| ||    
T  41384614 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattata-tttttatgcaaatattctttcattgaagga-aaaaaaaaaacgtatcttc 41384711  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttg 255  Q
    |||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  41384712 agtgtggtattcgttccaaatttatgagttatacttttactataaatatagaccttg 41384768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 181434 - 181598
Alignment:
Q  130 tttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattcgttccaaatttatgagtt 229  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||        |||||||| |||||||| |||||||||||||||||||||||    
T  181434 tttgaaagggaatattatatttttgatgcaaatattctttcactaaaggagaagaaaaaaacgtatcttcagtgtggtattcgttccaaatttatgagtt 181533  T
Q  230 ata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaacaa 299  Q
    ||| |||  |||||||||||||| |||||||        | ||||| ||||||||||||||||||||||||    
T  181534 atacttttactataaatatagactttgtatc------agactaaactttgagatagagggggctgaaacaa 181598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 3873882 - 3874033
Alignment:
Q  110 acgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag-nnnnnnngaacgtatcatcagtgtgata 208  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||         ||| |||| || ||||| ||    
T  3873882 acgatttgatgcaaatatattttgaaagagaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaaacatatcttcggtgtggta 3873981  T
Q  209 ttcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    || ||||||||||||||||||||| |||  |||||||||||||| |||||||    
T  3873982 tttgttccaaatttatgagttatacttttactataaatatagactttgtatc 3874033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 32339261 - 32339332
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||||| |||||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  32339261 aacgtatcttcagtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 32339332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 24873566 - 24873495
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||||| |||||||  |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  24873566 aacgtatcttcagtgttgtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 24873495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 27911036 - 27911076
Alignment:
Q  260 ttgtatcaa-gtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  27911036 ttgtatcaatgtaaaccttgagatagagggggctgaaacaa 27911076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 27957455 - 27957495
Alignment:
Q  260 ttgtatcaa-gtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  27957455 ttgtatcaatgtaaaccttgagatagagggggctgaaacaa 27957495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 1225197 - 1225227
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  1225197 gtaaaccttgagatagagggggctgaaacaa 1225227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 14419495 - 14419465
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  14419495 gtaaaccttgagatagagggggctgaaacaa 14419465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 35872682 - 35872652
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  35872682 gtaaaccttgagatagagggggctgaaacaa 35872652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 37214514 - 37214484
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  37214514 gtaaaccttgagatagagggggctgaaacaa 37214484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Complemental strand, 5623041 - 5623012
Alignment:
Q  270 taaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||||||||||||||||||||||    
T  5623041 taaaccttgagatagagggggctgaaacaa 5623012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 299
Target Start/End: Complemental strand, 27107200 - 27107171
Alignment:
Q  270 taaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||||||||||||||||||||||    
T  27107200 taaaccttgagatagagggggctgaaacaa 27107171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 32339215 - 32339252
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaag 137  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  32339215 cgtatgaagaacgatttgatgcaaatatattttgaaag 32339252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 13858798 - 13858758
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  13858798 ttgtatcagagtaaaccttgagatagagggggatgaaacaa 13858758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 25952554 - 25952582
Alignment:
Q  271 aaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||    
T  25952554 aaaccttgagatagagggggctgaaacaa 25952582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 26775234 - 26775262
Alignment:
Q  271 aaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||    
T  26775234 aaaccttgagatagagggggctgaaacaa 26775262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 23452708 - 23452549
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        || ||| | ||    
T  23452708 cgtatgaaggacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aaagtaccttc 23452610  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
    |||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  23452609 agtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 23452549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 42452570 - 42452730
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        || ||||| ||    
T  42452570 cgtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaaaaatgtatcttc 42452669  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
     ||||| |||| ||||||||||||||||||||| |||   ||||||||||||| |||||||    
T  42452670 ggtgtggtatttgttccaaatttatgagttatacttttattataaatatagacattgtatc 42452730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 35218444 - 35218286
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||        |||| ||| ||    
T  35218444 cgtataaagaacgatttgatgcaaatatattttgaaagagaatattatatttttgatgcaaatattctttcactgaaggagaaaaaaa-aacgaatcttc 35218346  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtat 258  Q
    |||||| |||| | ||||||||||||||||||| |||  |||||||||||||||||||||    
T  35218345 agtgtggtatttgctccaaatttatgagttatacttttactataaatatagaccttgtat 35218286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 35216063 - 35215904
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatc 199  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||        || | ||| ||    
T  35216063 cgtataaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcagatattctttcactgaaggagaaaaaaa-aatgaatcttc 35215965  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatc 259  Q
     ||||| |||| ||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  35215964 ggtgtggtatttgttccaaatttatgagttatacttttactataaatatagaccttgtatc 35215904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 27583773 - 27583634
Alignment:
Q  113 atttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggagnnnnnnngaacgtatcatcagtgtgatattcg 212  Q
    |||||||||||||||||||||||| ||||||||       | ||||||||||||||||||||||||||        || ||||| |||| ||||||| ||    
T  27583773 atttgatgcaaatatattttgaaaaggaatatt-------tgatgcaaatattctttcactgaaggagaaaaaagaaatgtatcttcagcgtgatatccg 27583681  T
Q  213 ttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  27583680 ttccaaatttatgagttatatttctctataaatatagatcttgtatc 27583634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 42923973 - 42923893
Alignment:
Q  100 cgtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag 180  Q
    ||||| ||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||    
T  42923973 cgtatgaagaacgatttgatgcaaatatattttgaaaagaaatattatatttttgatgcaaatattctttcactgaaggag 42923893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 15693794 - 15693858
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagacct 253  Q
    |||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  15693794 aacgtatcttcagcgtgatatccgttctaaatttatgagttatatttctctataaatataaacct 15693858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 41304762 - 41304696
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttg 255  Q
    |||||||| |||| ||||||| | |||||||||||||||||||||||||||||||||| ||| ||||    
T  41304762 aacgtatcttcagcgtgatatccattccaaatttatgagttatatttctctataaatacagatcttg 41304696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 41303411 - 41303344
Alignment:
Q  192 gtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||||||||| ||||||| | ||||||||||| |||||||||||||||||||||| | | ||||||||    
T  41303411 gtatcatcagcgtgatatccattccaaatttacgagttatatttctctataaataaatatcttgtatc 41303344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 34575588 - 34575528
Alignment:
Q  113 atttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag 180  Q
    |||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||    
T  34575588 atttgatgcaaatatattttgaaagggaata-------tttgatgcaaatattctttcactgaaggag 34575528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 28568623 - 28568584
Alignment:
Q  106 aaggacgatttgatgcaaatatattttgaaagggaatatt 145  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  28568623 aaggaagatttgatgcaaatatattttgaaagggaatatt 28568584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 12342724 - 12342684
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  12342724 ttgtatcagagtaaaccttgagatagagggggctgaaacaa 12342684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 19007581 - 19007621
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  19007581 ttgtatcatagtaaaccttgagatagagggggctgaaacaa 19007621  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 299
Target Start/End: Complemental strand, 37963232 - 37963201
Alignment:
Q  268 agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||||||||||||||||||||||||||    
T  37963232 agtaaaccttgagatagagggggctgaaacaa 37963201  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 42923870 - 42923823
Alignment:
Q  209 ttcgttccaaatttatgagttata-tttctctataaatatagaccttg 255  Q
    |||||||||||||||||||||||| |||  ||||||||||||||||||    
T  42923870 ttcgttccaaatttatgagttatacttttactataaatatagaccttg 42923823  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 17849068 - 17849098
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  17849068 gtaaaccttgagatagagggggctgaaacaa 17849098  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Complemental strand, 34979883 - 34979853
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  34979883 gtaaaccttgagatagagggggctgaaacaa 34979853  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 7502763 - 7502835
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagt--tatatttctctataaatatagaccttgtatc 259  Q
    |||||||| |||| ||||||| | ||||||||||| ||||  |||||||||||||||||| ||| | ||||||    
T  7502763 aacgtatcttcagcgtgatatccattccaaatttacgagttatatatttctctataaatacagatcatgtatc 7502835  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 297
Target Start/End: Complemental strand, 38414340 - 38414311
Alignment:
Q  268 agtaaaccttgagatagagggggctgaaac 297  Q
    ||||||||||||||||||||||||||||||    
T  38414340 agtaaaccttgagatagagggggctgaaac 38414311  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 40032373 - 40032332
Alignment:
Q  259 cttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  40032373 cttgtatcagagtaaactttgagatagagggggctgaaacaa 40032332  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 28196578 - 28196618
Alignment:
Q  260 ttgtatca-agtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  28196578 ttgtatcagagtaaacattgagatagagggggctgaaacaa 28196618  T

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Target: scaffold0031 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 101 - 299
Target Start/End: Original strand, 79005 - 79199
Alignment:
Q  101 gtatcaaggacgatttgatgcaaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaagga-gnnnnnnngaacgtatcatc 199  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |        || ||||| ||    
T  79005 gtatgaagaacgatttgatgcaaatatattttgaaagggaatattatatttttgatgcaaatattctttcactgaaggaggaaaaaaaaaatgtatcttc 79104  T
Q  200 agtgtgatattcgttccaaatttatgagttata-tttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagagggggctgaaaca 298  Q
    |||||| ||||||||||||||||||||||||||  ||  |||||||||||||||||| |||        |||||| |||||||||||||||||| |||||    
T  79105 agtgtggtattcgttccaaatttatgagttatacctttactataaatatagaccttgaatc------agagtaaaacttgagatagagggggctaaaaca 79198  T

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Target: scaffold0133 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 4724 - 4825
Alignment:
Q  189 aacgtatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatcttgtatcaagtaaaccttgagatagaggg 288  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  4724 aacgtatcttcagtgtgatattcgtttcaaatttatgagttatatttctctataaatatagaccttgtatc------agagtaaaccttgagatagaggg 4817  T
Q  289 ggctgaaa 296  Q
    | ||||||    
T  4818 gtctgaaa 4825  T

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Target: scaffold0468 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 2080 - 2022
Alignment:
Q  122 aaatatattttgaaagggaatattatattttttatgcaaatattctttcactgaaggag 180  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  2080 aaatatattttgaaagagaatattatatttttgatgcaaatattctttcactgaaggag 2022  T

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Target: scaffold0468; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 2004 - 1940
Alignment:
Q  193 tatcatcagtgtgatattcgttccaaatttatgagttatatttctctataaatatagaccttgtatc 259  Q
    |||| |||| ||||||| | ||||||||||| |||||| |||||||  |||||||||||||||||||    
T  2004 tatcttcagcgtgatatccattccaaatttacgagttacatttctc--taaatatagaccttgtatc 1940  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 79843 - 79873
Alignment:
Q  269 gtaaaccttgagatagagggggctgaaacaa 299  Q
    |||||||||||||||||||||||||||||||    
T  79843 gtaaaccttgagatagagggggctgaaacaa 79873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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