View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_93 (Length: 299)
Name: NF20665_low_93
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_93 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 1440799 - 1441088
Alignment:
| Q |
1 |
tgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaacatgatgcgaggggaacaattgaagggtaacactctattagatgatggtat |
100 |
Q |
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| T |
1440799 |
tgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaacatgatgcgaggggaacaattgaagggtaacactctattagatgatcgtat |
1440898 |
T |
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| Q |
101 |
gtttaaagatagcgattggtttaaccaaatataattgactaccagcatgtcttgtgtgacatatggattgaggacttgattctaagtacaacataggaac |
200 |
Q |
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| T |
1440899 |
gtttaaagacagtgattggtttaaccaaatataattgactaccagcatgtcttgtgtgacatatggattgaggacttgattctaagtacaacgtaggaac |
1440998 |
T |
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| Q |
201 |
tacaattgagagcatggatcgccacaatttggttctgtgctcaaaggatatggagcagtttgcacaaagtcttttgtgaacaagaataat |
290 |
Q |
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| T |
1440999 |
tacaattgagagcatggatcgccacaatttggttctgtgctcaaaggatatgaagcagtttgcacaaagtcttttgtgaacaagaataat |
1441088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1453172 - 1453268
Alignment:
| Q |
1 |
tgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctattagatgat |
95 |
Q |
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| T |
1453172 |
tgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttttagatgat |
1453268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1464864 - 1464960
Alignment:
| Q |
1 |
tgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctattagatgat |
95 |
Q |
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| T |
1464864 |
tgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttttagatgat |
1464960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 41705258 - 41705298
Alignment:
| Q |
214 |
atggatcgccacaatttggttctgtgctcaaaggatatgga |
254 |
Q |
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| T |
41705258 |
atggatcgccacagtttggttctgtgctcaaaggatatgga |
41705298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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