View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_96 (Length: 290)
Name: NF20665_low_96
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_96 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 19148315 - 19148586
Alignment:
| Q |
1 |
gcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19148315 |
gcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccac |
19148414 |
T |
|
| Q |
101 |
gttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacaactagtaaactcttcacacaaaatctttcagttggtgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19148415 |
gttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacaactagaaaactcttcacacaaaatctttcagttggtgatat |
19148514 |
T |
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| Q |
201 |
gtttatattcccaaagggtcttgttcattttcaacataatgctgatgcaaaggttcctgctcttgctatatc |
272 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19148515 |
gtttatattcccaaaaggtcttgttcattttcaacataatgctgatcaaaaggttcctgctcttgctatatc |
19148586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 19144678 - 19144407
Alignment:
| Q |
1 |
gcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19144678 |
gcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccac |
19144579 |
T |
|
| Q |
101 |
gttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacaactagtaaactcttcacacaaaatctttcagttggtgatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
19144578 |
gttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacagctagcaaactcttcacacaaaatctttcagttggtgatat |
19144479 |
T |
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| Q |
201 |
gtttatattcccaaagggtcttgttcattttcaacataatgctgatgcaaaggttcctgctcttgctatatc |
272 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19144478 |
gtttatattcccaaaaggtcttgttcattttcaacataatgctgatcaaaaggttcctgctcttgctatatc |
19144407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 234
Target Start/End: Original strand, 36421164 - 36421369
Alignment:
| Q |
29 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
128 |
Q |
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||||||||||||| |||||||||||||| | || |||| | ||| ||||||||||| |||||||| |||||||| || |||||||| | ||| | |
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| T |
36421164 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagctactcttcctcgttaa |
36421263 |
T |
|
| Q |
129 |
aggttcacttcaagttgggtttgttgacacaactagtaaactcttcacacaaaatctttcagttggtgatatgtttatattcccaaagggtcttgttcat |
228 |
Q |
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|||||| ||| | ||||| |||||||||||||| | ||| || ||||| || | || | |||||| |||||| | || |||||||| ||||||||| |
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| T |
36421264 |
aggttcccttaatgttggttttgttgacacaaccaataagctattcactcagacactacaacctggtgacatgtttgtgtttccaaagggacttgttcat |
36421363 |
T |
|
| Q |
229 |
tttcaa |
234 |
Q |
| |
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|||||| |
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| T |
36421364 |
tttcaa |
36421369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 161
Target Start/End: Original strand, 36424688 - 36424820
Alignment:
| Q |
29 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
128 |
Q |
| |
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||||||||||||| |||||||||||||| | || |||| | ||| |||||||||||||||||||| |||||||| || |||||||| | ||| | |
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| T |
36424688 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacacacacaccctcgttcagccgagctactcttcctcgttaa |
36424787 |
T |
|
| Q |
129 |
aggttcacttcaagttgggtttgttgacacaac |
161 |
Q |
| |
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|||||| ||| | ||||| || ||||||||||| |
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| T |
36424788 |
aggttcccttaatgttggtttcgttgacacaac |
36424820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 36427711 - 36427751
Alignment:
| Q |
79 |
aatccaccacacacacacccacgttcagctgaactactctt |
119 |
Q |
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|||||||||||||||||||| |||||||| || |||||||| |
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| T |
36427711 |
aatccaccacacacacaccctcgttcagccgagctactctt |
36427751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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