View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_low_98 (Length: 288)
Name: NF20665_low_98
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_98 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 5284180 - 5283900
Alignment:
| Q |
8 |
aatgacattagcacatcagtttttgggtgatatataccaaaacaaatcacataatgaccaagatcaatgtaaacgaaaagtatctaataatatttatata |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5284180 |
aatgacattagcacatcagtttttgggtgatatataccaaaaccaatcacataatgatcaagataaatataaacgaaaagtatctaataatatttatata |
5284081 |
T |
|
| Q |
108 |
ttcaagtatatcaaaataataaataaaggagaagaatacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaa |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5284080 |
ctcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaa |
5283981 |
T |
|
| Q |
208 |
agtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
5283980 |
agtaaaaatcaggatacgtgctttgttcaacacaatttgctggatttgcagtcccaatggccaagatggttgcagggcctt |
5283900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 5289947 - 5290227
Alignment:
| Q |
8 |
aatgacattagcacatcagtttttgggtgatatataccaaaacaaatcacataatgaccaagatcaatgtaaacgaaaagtatctaataatatttatata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |
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|
| T |
5289947 |
aatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgaccaagataaatgtaaacgaaaagtatctaaaaatatttttata |
5290046 |
T |
|
| Q |
108 |
ttcaagtatatcaaaataataaataaaggagaagaatacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaa |
207 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
5290047 |
ctcaagtttatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaa |
5290146 |
T |
|
| Q |
208 |
agtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |
|
|
| T |
5290147 |
agtaaaaatcaggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggacctt |
5290227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 5302368 - 5302088
Alignment:
| Q |
8 |
aatgacattagcacatcagtttttgggtgatatataccaaaacaaatcacataatgaccaagatcaatgtaaacgaaaagtatctaataatatttatata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
5302368 |
aatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgaccaagataaatgtaaacgaaaagtatctaaaaatatttttata |
5302269 |
T |
|
| Q |
108 |
ttcaagtatatcaaaataataaataaaggagaagaatacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaa |
207 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
5302268 |
ctcaagtttatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaa |
5302169 |
T |
|
| Q |
208 |
agtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||| |
|
|
| T |
5302168 |
agtaaaaatcaggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggacctt |
5302088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 68 - 288
Target Start/End: Complemental strand, 5314762 - 5314542
Alignment:
| Q |
68 |
agatcaatgtaaacgaaaagtatctaataatatttatatattcaagtatatcaaaataataaataaaggagaagaatacttacgcatgcgctgaaatttc |
167 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
5314762 |
agataaatgtaaacgaaaagtatctaaaaatatttatatactcaagtatatcaaaataataaatagaggagaagaatacttacacatgcgctgaaatttc |
5314663 |
T |
|
| Q |
168 |
tcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatgg |
267 |
Q |
| |
|
||||| |||||| |||||||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5314662 |
tctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatgg |
5314563 |
T |
|
| Q |
268 |
ccaaaatggttgcaggacctt |
288 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5314562 |
ccaaaatggttgcaggacctt |
5314542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 73 - 288
Target Start/End: Complemental strand, 5309943 - 5309725
Alignment:
| Q |
73 |
aatgtaaacgaaaagtatctaataatatttatatattcaagtatatcaaaataataa---ataaaggagaagaatacttacgcatgcgctgaaatttctc |
169 |
Q |
| |
|
|||||||| | ||||||||||| ||||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5309943 |
aatgtaaaagtaaagtatctaaaaatatttttatactcaagtatatcaaaataataataaatagaggagaagaatacttacacatgcgctgaaatttctc |
5309844 |
T |
|
| Q |
170 |
ttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaatttgctggatttgcagtaccaatggcc |
269 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5309843 |
cttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatggcc |
5309744 |
T |
|
| Q |
270 |
aaaatggttgcaggacctt |
288 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
5309743 |
aaaatagttgcaggacctt |
5309725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 145 - 288
Target Start/End: Complemental strand, 1504534 - 1504391
Alignment:
| Q |
145 |
acttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaatt |
244 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||| || || ||||| |||||||||||||||||||| |
|
|
| T |
1504534 |
acttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttcaacacaatt |
1504435 |
T |
|
| Q |
245 |
tgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1504434 |
tggtggatttgcagtgccaatggccaaaatggttgcaggacctt |
1504391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 143 - 288
Target Start/End: Complemental strand, 1491772 - 1491627
Alignment:
| Q |
143 |
atacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaa |
242 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| || |||||||||||||| || |||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
1491772 |
atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag |
1491673 |
T |
|
| Q |
243 |
tttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
1491672 |
tttgctggatttgcagtgccaatggccaatatggttgcaggacctt |
1491627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 144 - 288
Target Start/End: Complemental strand, 1481881 - 1481737
Alignment:
| Q |
144 |
tacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaat |
243 |
Q |
| |
|
||||||| |||||| |||||||| ||||| ||||| ||| || |||||||||||||||||||||||||| || ||||| ||||||||||||||||| | |
|
|
| T |
1481881 |
tacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacagt |
1481782 |
T |
|
| Q |
244 |
ttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
1481781 |
ttgctggatttgcagtgccaatggccaatatggttgcaggacctt |
1481737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 1477775 - 1477626
Alignment:
| Q |
139 |
aagaatacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaac |
238 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||| |||||| |||||| ||||||||||||||||| |||||||| || ||||| |||||||||||||| |
|
|
| T |
1477775 |
aagaatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaac |
1477676 |
T |
|
| Q |
239 |
acaatttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
||| || |||||||||||||| |||||||||| ||||| ||||| |||| |
|
|
| T |
1477675 |
acagttggctggatttgcagtgccaatggccatgatggtggcagggcctt |
1477626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 288
Target Start/End: Complemental strand, 1485624 - 1485473
Alignment:
| Q |
139 |
aagaatacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaa--agtccggataagtgctttgttca |
236 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | |||| || ||||| || || |||| |||| | ||||| | | || ||||| |||||||||||| |
|
|
| T |
1485624 |
aagaatacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttca |
1485525 |
T |
|
| Q |
237 |
acacaatttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||| ||| ||||||| |||| |
|
|
| T |
1485524 |
acacaatttggtggatttgcagttcctatggccaagatgattgcagggcctt |
1485473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 1496972 - 1496860
Alignment:
| Q |
153 |
atgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaatttgctggat |
252 |
Q |
| |
|
|||||||| ||||||| ||||| |||||| ||||| ||| ||||||||| | | || || | || ||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
1496972 |
atgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaatttgttggat |
1496873 |
T |
|
| Q |
253 |
ttgcagtaccaat |
265 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
1496872 |
ttgcagtgccaat |
1496860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 142 - 288
Target Start/End: Complemental strand, 44128351 - 44128205
Alignment:
| Q |
142 |
aatacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca |
241 |
Q |
| |
|
||||||||| |||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| ||||||||||||||||| |
|
|
| T |
44128351 |
aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
44128252 |
T |
|
| Q |
242 |
atttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
44128251 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggcctt |
44128205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 142 - 288
Target Start/End: Complemental strand, 44132556 - 44132410
Alignment:
| Q |
142 |
aatacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca |
241 |
Q |
| |
|
||||||||| |||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| ||||||||||||||||| |
|
|
| T |
44132556 |
aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
44132457 |
T |
|
| Q |
242 |
atttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
44132456 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggcctt |
44132410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 142 - 288
Target Start/End: Complemental strand, 44140978 - 44140832
Alignment:
| Q |
142 |
aatacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca |
241 |
Q |
| |
|
||||||||| |||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| || || ||||| ||||||||||||||||| |
|
|
| T |
44140978 |
aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacaca |
44140879 |
T |
|
| Q |
242 |
atttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
||| ||||| |||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
44140878 |
attggctgggtttgcagtgccaatggctaaaatggttgcagggcctt |
44140832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 288
Target Start/End: Original strand, 24165436 - 24165582
Alignment:
| Q |
142 |
aatacttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacaca |
241 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| |||| | ||||| || |||||||||| | ||||||| || || ||||| ||||||||||||||||| |
|
|
| T |
24165436 |
aatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacaca |
24165535 |
T |
|
| Q |
242 |
atttgctggatttgcagtaccaatggccaaaatggttgcaggacctt |
288 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || |||||||| |||| |
|
|
| T |
24165536 |
gtttggtggatttgcagtgccaatggccaagatagttgcagggcctt |
24165582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 37863716 - 37863829
Alignment:
| Q |
146 |
cttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgattttaaagtaaaagtccggataagtgctttgttcaacacaattt |
245 |
Q |
| |
|
||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||| ||||| || || || |||||||| ||| |
|
|
| T |
37863716 |
cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacacagttt |
37863815 |
T |
|
| Q |
246 |
gctggatttgcagt |
259 |
Q |
| |
|
||||||||||| |
|
|
| T |
37863816 |
tgaggatttgcagt |
37863829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
| Q |
146 |
cttacgcatgcgctgaaatttctcttttagttcagttttgtgttcactgtttgtgat |
202 |
Q |
| |
|
||||| ||||||||||||||| ||||| || ||||| || ||||||||||||||||| |
|
|
| T |
37859726 |
cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat |
37859782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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