View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20666_high_3 (Length: 320)
Name: NF20666_high_3
Description: NF20666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20666_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 4419177 - 4419020
Alignment:
| Q |
1 |
aagttgattagttttagattagaaaatctgccaaccaaatgtgtccaatttgttgnnnnnnntccaaggagctagaaaggatcaagtgtcatcttagtcc |
100 |
Q |
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| T |
4419177 |
aagttgattagttttagattagaaaatctgccaaccaaatgtgtccaatttgttgaaaaaaatccaaggagctagaaaggatcaagtgtcatcttagtcc |
4419078 |
T |
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| Q |
101 |
atgccttaatgaattgaagaggctactaaatactaatcaaactttccttttcgtacac |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4419077 |
atgccttaatgaattgaagaggctactaaatactaatcaaactttccttttcgtacac |
4419020 |
T |
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