View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20666_low_3 (Length: 375)
Name: NF20666_low_3
Description: NF20666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20666_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 29981970 - 29981615
Alignment:
| Q |
1 |
aggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981970 |
aggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaat |
29981871 |
T |
|
| Q |
101 |
aatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981870 |
aatggcttgcctttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgta |
29981771 |
T |
|
| Q |
201 |
gtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttccgtttcacaaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29981770 |
gtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttccgtttcacaaaca |
29981671 |
T |
|
| Q |
301 |
ccaacgagttgatggaactatggaatcattaggacactcgtttcgcgtaatgaatg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29981670 |
ccaacgagttgatggaactatggaatcattagggcactcgtttcgcgtaatgaatg |
29981615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 8156063 - 8156284
Alignment:
| Q |
4 |
aacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaataat |
103 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8156063 |
aacacgaaagcgagcaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataagaatggttcataaggcaagaaataat |
8156162 |
T |
|
| Q |
104 |
ggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgtagta |
203 |
Q |
| |
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||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8156163 |
ggcatgcccttt-ggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgtccta |
8156261 |
T |
|
| Q |
204 |
tgacagcaatttcatctctcaat |
226 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
8156262 |
tgacagcaatttcatctctcaat |
8156284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 51404731 - 51405083
Alignment:
| Q |
1 |
aggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaat |
100 |
Q |
| |
|
|||||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||||||| ||||||| || | |||||||| || ||| | || |
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|
| T |
51404731 |
aggaacccgaaagcgaggaagactctgtatctatgcaatgcacttgatggaactctcagaaagatcttcagctatctccatggttcacaaagcacgtaac |
51404830 |
T |
|
| Q |
101 |
aatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgta |
200 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||| |||| |||||||| || || || ||| | |||||| | || | ||||||||||||||| |
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| T |
51404831 |
aatggaatgcccttttggaacaaaaaacaaaatga---tgaagatcaaatggttatcgctttccaaacctatggaaaattgaacagtgtcaatgttcgtc |
51404927 |
T |
|
| Q |
201 |
gtatgacagcaatttcatctctcaataacattcatgaagacatttgttcaagtgcacaccaaaagcgagttgcgatgattctacttccgtttcacaaaca |
300 |
Q |
| |
|
|||||||| ||||| |||||| ||||| |||||||| |||||| | ||||| || |||||||| | |||| || || ||||| || || ||||| |
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|
| T |
51404928 |
ccatgacagccatttctgctctcagcaacatccatgaagatatttgtactagtgctcatcaaaagcgtgcctcgataatactccttccattccataaaca |
51405027 |
T |
|
| Q |
301 |
ccaacgagttgatggaactatggaatcattaggacactcgtttcgcgtaatgaatg |
356 |
Q |
| |
|
||| || | |||||||| ||||| ||||||||||| || |||| |||||||||| |
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|
| T |
51405028 |
ccagcgtatagatggaacgatggagtcattaggacattcatttcatgtaatgaatg |
51405083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 7674781 - 7675006
Alignment:
| Q |
1 |
aggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7674781 |
aggaacacgaaagcgaggaaagttgtgtatatatgcaatgcacttaatggaactctgagaaagaccttcagccataacaatggttcataaggcaagaaat |
7674880 |
T |
|
| Q |
101 |
aatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgta |
200 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7674881 |
aatggcatgcccttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttgaagcttatggacatttaagtagtgtcaatgttcgtc |
7674980 |
T |
|
| Q |
201 |
gtatgacagcaatttcatctctcaat |
226 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
7674981 |
ctatgacaacaatttcatctctcaat |
7675006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 36613664 - 36613439
Alignment:
| Q |
1 |
aggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36613664 |
aggaacacgaaagcgaggaaagttgtgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaat |
36613565 |
T |
|
| Q |
101 |
aatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgta |
200 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36613564 |
aatggcatgcccttttggaacaaaaaacaacatgacaacaaagaccaaatggtaattgcatttgaagcttatggacatttaagtagtgtcaatgttcgtc |
36613465 |
T |
|
| Q |
201 |
gtatgacagcaatttcatctctcaat |
226 |
Q |
| |
|
| ||||| ||||||||||||||||| |
|
|
| T |
36613464 |
ctgtgacaacaatttcatctctcaat |
36613439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 25523887 - 25523662
Alignment:
| Q |
1 |
aggaacacgaaagcgaggaaagttatgtatatatgcaatgcacttaatggaactctcagaaagaccttcagccataacaatggttcataaggcaagaaat |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25523887 |
aggaacacgaaagcaaggaaagttgtgtatatatgcaatgcacttaatagaactctcagaaagaccttcagccataacaatggttcataaggcaagaaat |
25523788 |
T |
|
| Q |
101 |
aatggcttgcctttttggaacaaaaaacaacatgacagcaaagaccaaatggtaattgcatttcaagcttatggacatttaagtagtgtcaatgttcgta |
200 |
Q |
| |
|
| |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
25523787 |
attggcatgcccttttggaacaaaaaacaacatgacaaaaaagaccaaatggtaattgcatttgaagcttatggacatttaagtagtgtcattgttcgtc |
25523688 |
T |
|
| Q |
201 |
gtatgacagcaatttcatctctcaat |
226 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
25523687 |
ctatgacaacaatttcatctctcaat |
25523662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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