View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20666_low_5 (Length: 227)
Name: NF20666_low_5
Description: NF20666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20666_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 36313129 - 36313313
Alignment:
| Q |
25 |
gaacagatatcatattgccccaaaaagaagcacgatcattataataattgtcttcatggttataacgaactggcatgcgcaaatcattaatctgatcaat |
124 |
Q |
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| T |
36313129 |
gaacagatataatattgccccaaaaagaagcacgatcattataatagttgttttcatggttataacgaactggcatgtgcaaatcattaatctgatcaat |
36313228 |
T |
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| Q |
125 |
gcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaataatggcg |
209 |
Q |
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| T |
36313229 |
gcagcttttctccaaaccttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcatttatcaataatggcg |
36313313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 36333266 - 36333380
Alignment:
| Q |
96 |
ggcatgcgcaaatcattaatctgatcaatgcagctttt-ctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcat |
194 |
Q |
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||||| |||| |||||| || ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
36333266 |
ggcattcgcatatcattgatttgatcaatgcacctttttctccaaatcttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcct |
36333365 |
T |
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| Q |
195 |
ttatcaataatggcg |
209 |
Q |
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| T |
36333366 |
ttatcaataatggcg |
36333380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 36327418 - 36327554
Alignment:
| Q |
72 |
ttgtcttcatggttataacgaactggcatgcgcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgt |
171 |
Q |
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| T |
36327418 |
ttgtcttcatggatataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatgt |
36327517 |
T |
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| Q |
172 |
caagagattcaagaagagggcatttatcaataatggc |
208 |
Q |
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| T |
36327518 |
caagagactcaagaagagggcagctatcaataatggc |
36327554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 36320605 - 36320710
Alignment:
| Q |
103 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat |
202 |
Q |
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| T |
36320605 |
gcaaatccttgatctggtcaatgcaccttttcgtcaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacaggacatttatcaat |
36320704 |
T |
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| Q |
203 |
aatggc |
208 |
Q |
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|||||| |
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| T |
36320705 |
aatggc |
36320710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 36335978 - 36336084
Alignment:
| Q |
103 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat |
202 |
Q |
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||||||| || ||||| |||||||| ||||||| |||| ||||||||||| | ||||| || |||||||||| ||||||||||||||||||||||||| |
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| T |
36335978 |
gcaaatccttgatctggtcaatgcaccttttcttcaaatcttcattcaaattaagacaaaaactaatgtcaagatattcaagaagagggcatttatcaat |
36336077 |
T |
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| Q |
203 |
aatggcg |
209 |
Q |
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||||||| |
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| T |
36336078 |
aatggcg |
36336084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 36325639 - 36325691
Alignment:
| Q |
157 |
gacaatcacgaatgtcaagagattcaagaagagggcatttatcaataatggcg |
209 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36325639 |
gacaaacactaatgtcaagagattcaagaagagggcatttatcaattatggcg |
36325691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 36309083 - 36309194
Alignment:
| Q |
103 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaa------ataatgacaatcacgaatgtcaagagattcaagaagagggcattt |
196 |
Q |
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| T |
36309083 |
gcaaatcattgatctgatcaatgcaccttttcttcaaactttcactcaattcaagataatgtcatcgacgaatgtcaagagatttaagcagagggcactt |
36309182 |
T |
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| Q |
197 |
atcaataatggc |
208 |
Q |
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| ||| |||||| |
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| T |
36309183 |
aacaagaatggc |
36309194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 16052979 - 16053018
Alignment:
| Q |
170 |
gtcaagagattcaagaagagggcatttatcaataatggcg |
209 |
Q |
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| T |
16052979 |
gtcaagagattcaagaaaagggcatttatcaagaatggcg |
16053018 |
T |
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