View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20667_high_11 (Length: 242)
Name: NF20667_high_11
Description: NF20667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20667_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21371586 - 21371361
Alignment:
| Q |
1 |
ccattgcaagccttgagaatatactacctgaaaccgaagcgactccggcgttaccaacgtcggactttgtgaggttaaggttgtcccggatgatcgggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21371586 |
ccattgcaagccttgagaatatactacctgaaaccgaagcgactccggcgttaccaacgtcggattttgtgaggttaaggttgtcccggatgatcgggac |
21371487 |
T |
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| Q |
101 |
taaaggtgctgccgcgaatgtcgatacgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371486 |
taaaggtgctgccgcgaatgtcgagacgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttg |
21371387 |
T |
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| Q |
201 |
aaaactttcgatttgtgttcagaatc |
226 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
21371386 |
aaaactttggatttgtgttcagaatc |
21371361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 21385971 - 21386196
Alignment:
| Q |
1 |
ccattgcaagccttgagaatatactacctgaaaccgaagcgactccggcgttaccaacgtcggactttgtgaggttaaggttgtcccggatgatcgggac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21385971 |
ccattgcaagccttgagaatatactacctgaaaccgaagcgactccggcgttaccaacgtcggattttgtgaggttaaggttgtcccggatgatcgggac |
21386070 |
T |
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| Q |
101 |
taaaggtgctgccgcgaatgtcgatacgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttg |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386071 |
taaaggtgctgccgcgaatgtcgagacgaaacaggtgaagaaagatatccatgataaatggaaggttctcatgtgagggttagccattgaaaagagtttg |
21386170 |
T |
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| Q |
201 |
aaaactttcgatttgtgttcagaatc |
226 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
21386171 |
aaaactttggatttgtgttcagaatc |
21386196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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