View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20667_high_3 (Length: 576)
Name: NF20667_high_3
Description: NF20667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20667_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Original strand, 1607340 - 1607896
Alignment:
| Q |
16 |
cagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacaga |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
1607340 |
cagcctgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacaga |
1607439 |
T |
|
| Q |
116 |
aaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatatat--tcatataaaa-gtacataa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||| |
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|
| T |
1607440 |
aaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagaaattttgattagtatgactatatatatattcatataaaaagtacataa |
1607539 |
T |
|
| Q |
213 |
gcgatagtgttatgacatcaatattatcatatgaatcaaatgtaaatctggagattacaaaattttaacannnnnnnnaggaaaaaattaaaacattata |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
1607540 |
gcgatagtgttatgacatcaatattatcatatgaatcaaatttaaatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattata |
1607639 |
T |
|
| Q |
313 |
tacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaacccta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607640 |
tacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcatttttatcttcccattttcaacccta |
1607739 |
T |
|
| Q |
413 |
tcatatttatattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagca |
512 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||| |||||||| |
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| T |
1607740 |
tcatatttatattactctatgtatgtcacaaaataaacattccataatttatctttcatttaattcttcctaaataaagttattgaataactttttagca |
1607839 |
T |
|
| Q |
513 |
gtacaatacttaaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
569 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607840 |
gcacaatacttaaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
1607896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 16 - 532
Target Start/End: Original strand, 1630336 - 1630852
Alignment:
| Q |
16 |
cagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630336 |
cagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacaga |
1630435 |
T |
|
| Q |
116 |
aaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatatattcatataaaagtacataagcg |
215 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
1630436 |
aaaccaatttgaaaatgacccttcttctgtttctgcaagtgacgaatccaaaatttttgattagtatgactatatatattcatataaaagtacataagcg |
1630535 |
T |
|
| Q |
216 |
atagtgttatgacatcaatattatcatatgaatcaaatgtaaatctggagattacaaaattttaacannnnnnnnaggaaaaaattaaaacattatatac |
315 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
1630536 |
atagtgctatgacttcaatattattatatgaatcaaatgtaaatctggagattacaaaattttaacattttttttaggaaaaaattaaaacattatatac |
1630635 |
T |
|
| Q |
316 |
ctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatca |
415 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630636 |
ctaaaatattgaatatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatca |
1630735 |
T |
|
| Q |
416 |
tatttatattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1630736 |
tatttatattactctatgtatgtcacaaaataaacactcaataatttatctttcatttaattcttcctgaataaagttattgaataaccttttagcagta |
1630835 |
T |
|
| Q |
516 |
caatacttaaattttaa |
532 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1630836 |
caatacttaaattttaa |
1630852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 566
Target Start/End: Original strand, 1624361 - 1624900
Alignment:
| Q |
16 |
cagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacaga |
115 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
1624361 |
cagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacaga |
1624460 |
T |
|
| Q |
116 |
aaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatatattcatataaaagtacataagcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
1624461 |
aaaccaatttggaaatgacccttcttctgtttctgcaagtgacggatccagaaattttgattagtatgactatatata--------aaagtacataagcc |
1624552 |
T |
|
| Q |
216 |
atagtgttatgacatcaatattatcatatgaatcaaatgtaaatctggagattacaaaattttaacannnnnnnnaggaaaaaattaaaacattatatac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
1624553 |
atagtgttatgacatcaatattatcatatgaattaaatttaaatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattatatac |
1624652 |
T |
|
| Q |
316 |
ctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||| |
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|
| T |
1624653 |
ctaaaatattgaagatacttgaacatctacaaattataattgctct--gtgtcttcttattttaaaattcatttttatatacccatttttaaccctatca |
1624750 |
T |
|
| Q |
416 |
tatttatattactctatgtatgtcacaaaataaacattcaataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
1624751 |
tatttatattactctatgtatgtcacaaaataaacattcaataatttatctttcatttaattcttcctaaataaagttattgaataattttttagcagta |
1624850 |
T |
|
| Q |
516 |
caatacttaaattttaaatagaaaaatataaaatcattgttagtacctttg |
566 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
1624851 |
caatactt-aattttaaatagaaaaaaataaaatcattgttaatacctttg |
1624900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 10819943 - 10819711
Alignment:
| Q |
16 |
cagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10819943 |
cagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagcttcctttcatgcacaga |
10819844 |
T |
|
| Q |
116 |
aaaccaatttggaaatgacccttc------ttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatatattcatat-aaaagtac |
208 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| ||||| ||||||| |||| ||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
10819843 |
aaaccaatttggaagtgacccttcttctatttctgtttctgcaa-tgacggatccagaaatttagattagtatgactatatatatttatataaaaagtac |
10819745 |
T |
|
| Q |
209 |
ataagcgatagtgttatgacatcaatattatcat |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10819744 |
ataagcgatagtgttatgacatcaatattatcat |
10819711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 293 - 407
Target Start/End: Complemental strand, 10819635 - 10819521
Alignment:
| Q |
293 |
gaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcattttta |
392 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||| | |||||||| |||||||||| ||||||||||||| ||||||||||||| |||||| |
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|
| T |
10819635 |
gaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaaaattctttttta |
10819536 |
T |
|
| Q |
393 |
tcttcccattttcaa |
407 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
10819535 |
gcttcccgttttcaa |
10819521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 523 - 569
Target Start/End: Original strand, 1631340 - 1631386
Alignment:
| Q |
523 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1631340 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
1631386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 1602996 - 1603086
Alignment:
| Q |
300 |
ttaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatc |
394 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | ||| |||| ||||||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
1602996 |
ttaaaacattatatacctaaaaaattgaagatacttcatcatatacaaattataattgc----tgtgtcttcatattttaaaattattttttatc |
1603086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 505 - 563
Target Start/End: Complemental strand, 10819219 - 10819162
Alignment:
| Q |
505 |
ttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagtacct |
563 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10819219 |
ttttagcactacaatacttac-ttttaaatagaaaaaaataaaatcattgttagtacct |
10819162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 18785387 - 18785528
Alignment:
| Q |
16 |
cagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18785387 |
cagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaatattgtactttactggagacttagactgcaaaagcttcctttcatgcataga |
18785486 |
T |
|
| Q |
116 |
aaaccaatttggaaatgacccttcttctgtttctgcaagtga |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785487 |
aaaccaatttggaaatgacccttcttctgtttctgcaagtga |
18785528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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