View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20667_high_7 (Length: 341)
Name: NF20667_high_7
Description: NF20667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20667_high_7 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 30836385 - 30836060
Alignment:
| Q |
16 |
tatgtaccgattttgaatttgaatctcaaccatcgttaattgcatttacttcatggctccactaataacattactgagcacaaggcagttcagcagctcc |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30836385 |
tatgtaccaattttgaatttgaatctcaaccatcgttaattgcatttacttcatggctccactaataacattactgagcacaaggcagttcagcagctcc |
30836286 |
T |
|
| Q |
116 |
acccaattcacatttgttcattttcaaggttaagaagttaactt----actttcccacaaatcttttcaattttccacgnnnnnnnntcaactgatgcca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||| || |
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|
| T |
30836285 |
acccaattcacatttgttcattttcaaggttaagaagttaacttacttactttcccacaaatctttccaatttttcacg-aaaaaaatcaactgatgtca |
30836187 |
T |
|
| Q |
212 |
atgtcttatcttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30836186 |
atgtcttatcttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatctt |
30836087 |
T |
|
| Q |
312 |
cttatgctccatttcttcatctctctc |
338 |
Q |
| |
|
||||||||||||||||| ||||||||| |
|
|
| T |
30836086 |
cttatgctccatttctttatctctctc |
30836060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 31 - 338
Target Start/End: Original strand, 18646111 - 18646421
Alignment:
| Q |
31 |
aatttgaatctcaaccatcgttaattgcatttacttcatggctccactaataacattactgagcacaaggcagttcagcagctccacccaattcacattt |
130 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| ||| ||| |||||||||||| |
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|
| T |
18646111 |
aatttgaatctcaaccatccttaattgcatttactttatggctccactaacaacattactgagcacaaggtagttcaatagccacacacaattcacattt |
18646210 |
T |
|
| Q |
131 |
gttcattttcaaggttaagaagttaacttact----ttcccacaaatcttttcaattttccacgnnnnnnnntcaactgatgccaatgtcttatcttcca |
226 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |
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|
| T |
18646211 |
gttcattttcaagattaagaagttaacttactcactttcccacaaatcttttcaattttccacgaaaaaaa-tcaaatgatgccaatgttttatcttcca |
18646309 |
T |
|
| Q |
227 |
tcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatcttcttatgctccatttc |
326 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
18646310 |
tcttctctaaatactcagttctaatatctgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaagggtcttcttatgctccatttc |
18646409 |
T |
|
| Q |
327 |
ttcatctctctc |
338 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
18646410 |
tttatctctctc |
18646421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 3193084 - 3192760
Alignment:
| Q |
17 |
atgtaccgattttgaatttgaatctcaaccatcgttaattgcatttacttcatggctccactaataacattactgagcacaaggcagttcagcagctcca |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
3193084 |
atgtaccaattttgaatttgaatctcaaccatcgttaattgcatttacttcatggctccactaataacattactgagcacaaggcacttcagcagctcca |
3192985 |
T |
|
| Q |
117 |
cccaattcacatttgttcattttcaaggttaagaagttaactt----actttcccacaaatcttttcaattttccacgnnnnnnnntcaactgatgccaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
3192984 |
cccaattcacatttgttcattttcaaggttaagaagttaacttactcacttttccacaaatcttttcaattttccac-caaaaaaatcaactgatgccga |
3192886 |
T |
|
| Q |
213 |
tgtcttatcttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatcttc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3192885 |
tgtcttatcttccatcttctctaaatactcagtcctaatattcgggtaacatctctttcaatgaacttatgcattcttcttcttctttgaaaggatcttc |
3192786 |
T |
|
| Q |
313 |
ttatgctccatttcttcatctctctc |
338 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
3192785 |
ttatgctccatttctttatctctctc |
3192760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 31 - 338
Target Start/End: Original strand, 8022885 - 8023195
Alignment:
| Q |
31 |
aatttgaatctcaaccatcgttaattgcatttacttcatggctccactaataacattactgagcacaaggcagttcagcagctccacccaattcacattt |
130 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
8022885 |
aatttgaatctcaaccatccttaattgcatttattttatggctccactaacaacattactgagcacaaggtagttcaatagcctcacccaattcacattt |
8022984 |
T |
|
| Q |
131 |
gttcattttcaaggttaagaagttaacttact----ttcccacaaatcttttcaattttccacgnnnnnnnntcaactgatgccaatgtcttatcttcca |
226 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |
|
|
| T |
8022985 |
gttcattttcaagattaagaagttaacttactcactttcccacaaatcttttcaattttccacgaaaaaaa-tcaaatgatgccaatgttttatcttcca |
8023083 |
T |
|
| Q |
227 |
tcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaaggatcttcttatgctccatttc |
326 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8023084 |
tcttctctaaatactcagttctaatatctgggtaacatccctttcaatgaactcatgcattcttcttcttctttgaaagggtcttcttatgctccatttc |
8023183 |
T |
|
| Q |
327 |
ttcatctctctc |
338 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
8023184 |
tttatctctctc |
8023195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 1141911 - 1142231
Alignment:
| Q |
16 |
tatgtaccgattttgaatttgaatctcaaccatcgttaattgcatttacttcatggctccactaataacattactgagcacaaggcagttcagcagctcc |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
1141911 |
tatgtaccaattttgaatttgaatctcaaccat-------tgcatttacttcatggctccactaataacattactgagcacaaggcagttcagtagcccc |
1142003 |
T |
|
| Q |
116 |
acccaattcacatttgttcattttcaaggttaagaagt---taacttactttcccacaaatcttttcaattttccacgnnnnnnnntcaactgatgccaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |||| ||||||||||| | |
|
|
| T |
1142004 |
acccaattcacatttgttcattttcaaggttaagaagtaacttactcactttcccacaaatcttttcaattttgcacg-aaaaaaatcaactgatgctga |
1142102 |
T |
|
| Q |
213 |
tgtcttatcttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactcatgca---ttcttcttcttctttgaaaggatc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
1142103 |
tgtcttatcttccatcttctctaaatactcaattctaatatctgggtaacatccctttcaatgaactcatgcattcttcttcttcttctttgaaagaatc |
1142202 |
T |
|
| Q |
310 |
ttcttatgctccatttcttcatctctctc |
338 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
1142203 |
ttcttatgctccatttctttatctctctc |
1142231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 31981958 - 31982286
Alignment:
| Q |
16 |
tatgtaccgattttgaatttgaatctcaaccatcgttaattgcatttacttcatggctccactaataacattactgagcacaaggcagttcagcagctcc |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| ||| | |
|
|
| T |
31981958 |
tatgtaccaattttgaatttgaatctcaaccatcgttaattgcatttacttcatggctccactaataacattactga--acaacgtagttcagtagcctc |
31982055 |
T |
|
| Q |
116 |
acccaattcacatttgttcattttcaaggttaagaagttaactt----actttcccacaaatcttttcaattttccacgnnnnnnnntcaactgatgcca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |||| || |
|
|
| T |
31982056 |
acccaattcacatttgttcattttcaaggttaagaagttaacttactcactttcccacaaatcttttcaatttttcacg-aaaaaaatcaacagatgtca |
31982154 |
T |
|
| Q |
212 |
atgtcttatcttccatcttctctaaatacacagttctaatatccgggtaacatccctttcaatgaactc--atgcattcttc---ttcttctttgaaagg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| |||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
31982155 |
atgtcttatcttccatcttctctaaatactcacttctaatatctgggtaacatctctttcaatgaactcatatgcattcttctttttcttctttgaaagg |
31982254 |
T |
|
| Q |
307 |
atcttcttatgctccatttcttcatctctctc |
338 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
|
|
| T |
31982255 |
gtcttcttatgctccatttctttatctctctc |
31982286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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