View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20667_low_10 (Length: 242)

Name: NF20667_low_10
Description: NF20667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20667_low_10
NF20667_low_10
[»] chr6 (6 HSPs)
chr6 (1-226)||(30836356-30836577)
chr6 (64-200)||(21762022-21762158)
chr6 (91-201)||(826693-826803)
chr6 (129-200)||(20915996-20916067)
chr6 (94-200)||(31442517-31442623)
chr6 (131-200)||(31665629-31665699)
[»] chr5 (4 HSPs)
chr5 (1-200)||(31981793-31981987)
chr5 (99-200)||(6697935-6698036)
chr5 (130-199)||(22780060-22780128)
chr5 (129-161)||(9045162-9045194)
[»] chr3 (8 HSPs)
chr3 (1-200)||(1141744-1141940)
chr3 (64-200)||(52041318-52041454)
chr3 (64-200)||(42655773-42655909)
chr3 (64-200)||(22424304-22424440)
chr3 (65-200)||(39484743-39484879)
chr3 (64-201)||(1529164-1529302)
chr3 (134-200)||(15996384-15996449)
chr3 (130-200)||(15291461-15291530)
[»] chr8 (6 HSPs)
chr8 (1-200)||(3193056-3193244)
chr8 (129-203)||(26083900-26083974)
chr8 (129-200)||(26981035-26981106)
chr8 (131-200)||(42315342-42315412)
chr8 (131-200)||(45244285-45244355)
chr8 (167-200)||(42932716-42932749)
[»] chr4 (5 HSPs)
chr4 (64-193)||(9451249-9451378)
chr4 (69-200)||(24257703-24257835)
chr4 (130-200)||(6898752-6898822)
chr4 (136-202)||(9199510-9199576)
chr4 (131-200)||(12094856-12094925)
[»] chr2 (7 HSPs)
chr2 (64-200)||(29280085-29280221)
chr2 (64-200)||(22625320-22625457)
chr2 (64-200)||(38996454-38996590)
chr2 (75-193)||(38955785-38955903)
chr2 (69-195)||(10601238-10601362)
chr2 (113-200)||(32281486-32281573)
chr2 (132-190)||(21922344-21922402)
[»] chr1 (4 HSPs)
chr1 (75-202)||(22964005-22964132)
chr1 (110-189)||(3908809-3908888)
chr1 (113-200)||(15700721-15700808)
chr1 (131-200)||(46555502-46555572)
[»] chr7 (5 HSPs)
chr7 (133-200)||(39742297-39742364)
chr7 (130-200)||(48850726-48850795)
chr7 (111-199)||(6253382-6253470)
chr7 (129-200)||(20077341-20077412)
chr7 (129-205)||(4407774-4407848)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 30836356 - 30836577
Alignment:
Q  1 gttgagattcaaattcaaaattggtacatatatagaagcacacttctatgtatgcttggaagaaaatttaaaaattgaacttagcttgccgagtagggaa 100  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30836356 gttgagattcaaattcaaaattggtacata----gaagcacacttctatgtatgcttggaagaaaatttaaaaattgaacttagcttgctgagtagggaa 30836451  T
Q  101 agcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  30836452 agcactcatgaaaattaaatgcttgggggatggagggaaaatattagattaaaattagggtgaacaattgcttgatcagacaagctttagtaagaaaaat 30836551  T
Q  201 gatctattgtgatgtacctagcttat 226  Q
    ||||||||||||||||||||||||||    
T  30836552 gatctattgtgatgtacctagcttat 30836577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 21762158 - 21762022
Alignment:
Q  64 aaatttaaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtga 163  Q
    |||||||||||||||||||||||||  ||||||| |||||||| | |||||||||||  ||| | ||||||||||||||| ||| |||||||||||||||    
T  21762158 aaatttaaaaattgaacttagcttgatgagtaggaaaagcactaacgaaaattaaataattgggtgatggagggaaaatagtaggttaaaattagggtga 21762059  T
Q  164 acaattgcttgatcagacaagctttagtaaaaaagat 200  Q
     |||| ||||||||||||||| |||||||| ||||||    
T  21762058 gcaatagcttgatcagacaagttttagtaagaaagat 21762022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 826693 - 826803
Alignment:
Q  91 gagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttag 190  Q
    ||||||| |||||||| | |||||||||||| ||| | ||||||||||||||||||| ||||||||| |||||||||| |||||| |||||||| |||||    
T  826693 gagtaggaaaagcactaacgaaaattaaatgattgggcgatggagggaaaatattaggttaaaattaaggtgaacaatagcttgaccagacaagttttag 826792  T
Q  191 taaaaaagatg 201  Q
    ||| |||||||    
T  826793 taagaaagatg 826803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 20915996 - 20916067
Alignment:
Q  129 gatggagggaaaatattagtttaaaattagggtgaaca-attgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||||| ||||||||| ||| | || ||||||||||||||||||||||||||| ||||||    
T  20915996 gatggagggaaaatattaggttaaaattaaggt-atcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 31442623 - 31442517
Alignment:
Q  94 tagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaa 193  Q
    |||| |||||||| | || |||| ||||||||   ||||||||||||||||||| |||||||||||||     ||||||||| || ||||||||||||||    
T  31442623 taggaaaagcacttaggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagctttagtaa 31442524  T
Q  194 aaaagat 200  Q
     ||||||    
T  31442523 gaaagat 31442517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 31665629 - 31665699
Alignment:
Q  131 tggagggaaaatattagtttaa-aattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||| |||| ||||||||| |  ||| |||||| || |||||||||||||| ||||||    
T  31665629 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 31665699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 31981987 - 31981793
Alignment:
Q  1 gttgagattcaaattcaaaattggtacatatatagaagcacacttctatgtatgcttggaagaaaatttaaaaattgaacttagcttgccgagtagggaa 100  Q
    ||||||||||||||||||||||||||||||    |||||||||  |||||||||||| ||||  |||||||||||| |||||||||||| ||||||| ||    
T  31981987 gttgagattcaaattcaaaattggtacata----gaagcacacgcctatgtatgcttcgaagggaatttaaaaattaaacttagcttgctgagtaggaaa 31981892  T
Q  101 agcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  31981891 agcactcatgaaaattaaatgcttga-ggatgtagggaaaatattaggttaaaattaggttgaacaattgcttgatcaaacaagctttagtaaaaaagat 31981793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 6698036 - 6697935
Alignment:
Q  99 aaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaag 198  Q
    |||||||||| || |||| ||||||||   ||||||||||||||||||| ||||||||| |||     ||||||||| |||||||| |||||||| ||||    
T  6698036 aaagcactcaagagaatttaatgcttgcatgatggagggaaaatattaggttaaaattaaggtatgagattgcttgaccagacaagttttagtaagaaag 6697937  T
Q  199 at 200  Q
    ||    
T  6697936 at 6697935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 22780060 - 22780128
Alignment:
Q  130 atggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaaga 199  Q
    |||||||||||| ||||| |||| |||||||| |||||| ||||||||||||||||||||| || |||||    
T  22780060 atggagggaaaa-attaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaaga 22780128  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 9045194 - 9045162
Alignment:
Q  129 gatggagggaaaatattagtttaaaattagggt 161  Q
    ||||||||||||||||||| |||||||||||||    
T  9045194 gatggagggaaaatattaggttaaaattagggt 9045162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 1141940 - 1141744
Alignment:
Q  1 gttgagattcaaattcaaaattggtacatatatagaagcacacttctatgtatgcttggaaga-aaatttaaaaattgaacttagcttgccgagtaggga 99  Q
    ||||||||||||||||||||||||||||||    ||||||||   | |||||||||||||||  |||||||||||||||||| ||||||  ||||||| |    
T  1141940 gttgagattcaaattcaaaattggtacata----gaagcacatgccgatgtatgcttggaagggaaatttaaaaattgaactcagcttgttgagtaggaa 1141845  T
Q  100 aagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaaga 199  Q
    || |||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||| || |||||||||||||| |||||    
T  1141844 aaacactaatgaaaattaaatgcttgggggatggagggaaaatattagattaaaattagagtgaacaattgcttgaccaaacaagctttagtaagaaaga 1141745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 52041318 - 52041454
Alignment:
Q  64 aaatttaaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtga 163  Q
    |||||||||||||||||||||||||  ||||||| |||||||| |  ||||||||||||||| | |||||| |||||||||||| |||||||||||||||    
T  52041318 aaatttaaaaattgaacttagcttgatgagtaggaaaagcactaaccaaaattaaatgcttgggtgatggaaggaaaatattaggttaaaattagggtga 52041417  T
Q  164 acaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||| |||||| ||||||||||||||||| ||||||    
T  52041418 acaatagcttgaccagacaagctttagtaagaaagat 52041454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 42655909 - 42655773
Alignment:
Q  64 aaatttaaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtga 163  Q
    |||||||||||||||||||||||||  ||||||| ||| |||| || ||||||||||||||| | |||| |||||||||||||  |||||||||||||||    
T  42655909 aaatttaaaaattgaacttagcttgatgagtaggaaaaacactaatcaaaattaaatgcttgggtgatgaagggaaaatattatgttaaaattagggtga 42655810  T
Q  164 acaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||| |||||| |||||||||||| |||| ||||||    
T  42655809 acaatagcttgaccagacaagctttggtaagaaagat 42655773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 22424304 - 22424440
Alignment:
Q  64 aaatttaaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtga 163  Q
    ||||| ||||||| ||||||||||   ||||||| |||| ||| |  ||||||||||| ||  | ||||||||||||||||||| |||||||||||||||    
T  22424304 aaattcaaaaattcaacttagcttaatgagtaggaaaagtactaacaaaaattaaatgtttaggtgatggagggaaaatattaggttaaaattagggtga 22424403  T
Q  164 acaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||| |||||| |||| || ||||||||| ||||||    
T  22424404 acaatagcttgaccagataaactttagtaagaaagat 22424440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 39484743 - 39484879
Alignment:
Q  65 aatttaaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaa 164  Q
    ||||||||||||||||||||   |  ||||||| |||||| | || ||||||||||| ||| | ||||||||||||||||||| |||||| |||||||||    
T  39484743 aatttaaaaattgaacttagaaagatgagtaggaaaagcattaattaaaattaaatgtttgggtgatggagggaaaatattaggttaaaactagggtgaa 39484842  T
Q  165 ca-attgcttgatcagacaagctttagtaaaaaagat 200  Q
    || || |||||| || |||||||||||||| ||||||    
T  39484843 catatagcttgaccaaacaagctttagtaagaaagat 39484879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 201
Target Start/End: Complemental strand, 1529302 - 1529164
Alignment:
Q  64 aaatttaaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaa-aattagggtg 162  Q
    |||||||||| |||||||||| |||  ||||||| ||| || | | || |||||| ||||||   ||||||||||||| ||||| |||| |||||||||     
T  1529302 aaatttaaaatttgaacttagtttgatgagtaggaaaaacattaacgagaattaattgcttgtatgatggagggaaaaaattaggttaagaattagggtt 1529203  T
Q  163 aacaattgcttgatcagacaagctttagtaaaaaagatg 201  Q
    |  ||| |||||| || |||||||||||||| |||||||    
T  1529202 actaatagcttgaccaaacaagctttagtaagaaagatg 1529164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 15996384 - 15996449
Alignment:
Q  134 agggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    |||||||| ||||| ||| ||||||||| |||||| |||||||||||||||||||||||| ||||||    
T  15996384 agggaaaa-attaggttagaattagggtaaacaatagcttgatcagacaagctttagtaagaaagat 15996449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 15291530 - 15291461
Alignment:
Q  130 atggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    |||||||||||| ||||| |||| |||||||| |||||| |||||| || |||||||||||||| ||||||    
T  15291530 atggagggaaaa-attaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagat 15291461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 3193056 - 3193244
Alignment:
Q  1 gttgagattcaaattcaaaattggtacatatatagaagcacacttctatgtatgcttggaagaaaatttaaaaattgaacttagcttgccgagtagggaa 100  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||| ||||||||| |||||||||| ||||||||| ||||||| ||    
T  3193056 gttgagattcaaattcaaaattggtacat---------cacacttctatgtatgcttgaaagaaaatt-aaaaattgaaattagcttgctgagtaggaaa 3193145  T
Q  101 agcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||| ||||||||| | |||| |||| ||||| ||||||||||||||||| ||||||    
T  3193146 agcactcatgaaaattaaatgtttg-ggaatggagggaaaatattaggttaaaattaagatgaataattacttgaccagacaagctttagtaagaaagat 3193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 26083974 - 26083900
Alignment:
Q  129 gatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagatgat 203  Q
    ||||||||||||||||||| |||||||||||||     ||||||||| ||||||||||||||||| |||||||||    
T  26083974 gatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagatgat 26083900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 26981106 - 26981035
Alignment:
Q  129 gatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    |||||||| |||||||||| |||||||||||||     |||||||||||| |||||||||||||| ||||||    
T  26981106 gatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagctttagtaagaaagat 26981035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 42315412 - 42315342
Alignment:
Q  131 tggagggaaaatattagtttaa-aattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||| |||| ||||||||| |  ||| |||||| || |||||||||||||| ||||||    
T  42315412 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 42315342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 45244285 - 45244355
Alignment:
Q  131 tggagggaaaatattagtttaa-aattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||| |||| ||||||||| |  ||| |||||| ||||||| ||||||||| ||||||    
T  45244285 tggagggaaaatattaggttaagaattagggttactaatagcttgaccagacaaactttagtaagaaagat 45244355  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 42932749 - 42932716
Alignment:
Q  167 attgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||||||||||||| ||||||    
T  42932749 attgcttgatcagacaagctttagtaagaaagat 42932716  T

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Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 9451378 - 9451249
Alignment:
Q  64 aaatttaaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtga 163  Q
    |||||||||||||||||||||||||  ||||| | |||||||| | |||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  9451378 aaatttaaaaattgaacttagcttgatgagtacgaaaagcactaacgaaaattaaatgcttgggtgatggagggaaaatattaggttaaaattagggtga 9451279  T
Q  164 acaattgcttgatcagacaagctttagtaa 193  Q
    ||||| |||||| |||||||||||||||||    
T  9451278 acaatagcttgaccagacaagctttagtaa 9451249  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 200
Target Start/End: Complemental strand, 24257835 - 24257703
Alignment:
Q  69 taaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaa-tgcttgagggatggagggaaaatattagtttaaaattagggtgaacaa 167  Q
    |||||||||||||||| |||  || |||| |||||||  |  | ||||||| |||||  | |||||||| |||||||||| |||||||||||||||||||    
T  24257835 taaaaattgaacttagtttgatgattaggaaaagcaccaactacaattaaaatgcttaggtgatggaggaaaaatattaggttaaaattagggtgaacaa 24257736  T
Q  168 ttgcttgatcagacaagctttagtaaaaaagat 200  Q
    |||||||| || |||||||||||||| ||||||    
T  24257735 ttgcttgaccaaacaagctttagtaagaaagat 24257703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 6898752 - 6898822
Alignment:
Q  130 atggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||| |||||||||||| |||| |||||||| | |||| ||||||||| |||||||||||||| ||||||    
T  6898752 atggacggaaaatattaggttaagattagggttaccaatagcttgatcaaacaagctttagtaagaaagat 6898822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 9199576 - 9199510
Alignment:
Q  136 ggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagatga 202  Q
    |||||||||||| |||||||||||||     ||||||||| ||||||||||||||||| ||||||||    
T  9199576 ggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagatga 9199510  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  131 tggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||| |||||||||||||    ||| |||||| || |||||||||||||| ||||||    
T  12094856 tggagggaaaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 29280221 - 29280085
Alignment:
Q  64 aaatttaaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtga 163  Q
    |||||||||||||||||||||||||  ||||| | |||||||| | |||||||| ||||||  | ||| ||||||||||||||| |||||||||||||||    
T  29280221 aaatttaaaaattgaacttagcttgatgagtacgaaaagcactaacgaaaattacatgcttaggtgattgagggaaaatattaggttaaaattagggtga 29280122  T
Q  164 acaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||| |||| |||||||||| |||||||| ||||||    
T  29280121 acaatagcttcatcagacaagttttagtaagaaagat 29280085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 22625320 - 22625457
Alignment:
Q  64 aaatttaaaaattgaacttagcttgccgagtagggaaagcactcatg---aaaattaaatgcttgagggatggagggaaaatattagtttaaaattaggg 160  Q
    |||||||||||||||||| | ||||| ||||||| |||||||| |||   ||||||||||| | | | ||||||||||||||||||| ||||||||||||    
T  22625320 aaatttaaaaattgaactcaacttgctgagtagg-aaagcact-atgtcaaaaattaaatgatggggtgatggagggaaaatattaggttaaaattaggg 22625417  T
Q  161 tgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    |   ||||||||||| |||||||| |||||||| ||||||    
T  22625418 tatccaattgcttgaccagacaagttttagtaagaaagat 22625457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 38996454 - 38996590
Alignment:
Q  64 aaatttaaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtga 163  Q
    |||||||||| ||||||||| ||||  ||||||| ||| |||| |  | ||||||||| |||   ||||||||||||||||||| ||||||||||||| |    
T  38996454 aaatttaaaatttgaacttaacttgatgagtaggaaaaacactaagcagaattaaatgtttgtttgatggagggaaaatattaggttaaaattagggt-a 38996552  T
Q  164 aca-attgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||| || |||||||||||||||||||||||| ||||||    
T  38996553 acatatagcttgatcagacaagctttagtaagaaagat 38996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 38955785 - 38955903
Alignment:
Q  75 ttgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttg 174  Q
    |||| |||| ||||| ||||||| |||||| | |  ||||||||||||||| | ||||||||||||||||||| ||| ||||||||| | |||| | |||    
T  38955785 ttgagcttaccttgctgagtaggaaaagcattaacaaaaattaaatgcttgggtgatggagggaaaatattaggttagaattagggttatcaatagtttg 38955884  T
Q  175 atcagacaagctttagtaa 193  Q
    |||||| ||||||||||||    
T  38955885 atcagataagctttagtaa 38955903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 10601238 - 10601362
Alignment:
Q  69 taaaaattgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaat 168  Q
    |||||||||||||||| |||| ||||||| ||| |||| |  ||||||||||||||  | ||||| ||||||| ||||  ||| ||||||| | ||||||    
T  10601238 taaaaattgaacttagattgctgagtaggaaaa-cactaacaaaaattaaatgcttaggtgatgg-gggaaaagattatgttagaattaggttaaacaat 10601335  T
Q  169 tgcttgatcagacaagctttagtaaaa 195  Q
    |||||||  ||||||||||||||||||    
T  10601336 tgcttgacaagacaagctttagtaaaa 10601362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 32281573 - 32281486
Alignment:
Q  113 aattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    |||| ||||||||  |||||||||||||||| ||| ||||||||||||| |  ||| |||||| || |||| ||||||||| ||||||    
T  32281573 aatttaatgcttgtaggatggagggaaaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 32281486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 21922402 - 21922344
Alignment:
Q  132 ggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttag 190  Q
    |||||||||||||||| |||| |||||||| |   || |||||||||||||||||||||    
T  21922402 ggagggaaaatattaggttaagattagggtaagttatagcttgatcagacaagctttag 21922344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 22964132 - 22964005
Alignment:
Q  75 ttgaacttagcttgccgagtagggaaagcactcatgaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttg 174  Q
    |||| |||| ||||| ||||||| |||||||| |  |||||||||||||||   ||||||||||||||||||| ||| ||||||||| | |||| |||||    
T  22964132 ttgagcttaccttgctgagtaggaaaagcactaacaaaaattaaatgcttggttgatggagggaaaatattaggttagaattagggttaccaatagcttg 22964033  T
Q  175 atcagacaagctttagtaaaaaagatga 202  Q
    | |||||||||||||||||  |||||||    
T  22964032 accagacaagctttagtaagtaagatga 22964005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 189
Target Start/End: Original strand, 3908809 - 3908888
Alignment:
Q  110 gaaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagcttta 189  Q
    |||||||||||| |||   |||| |||||||||| ||| ||||||||||||| | |||| ||||||||||||||||||||    
T  3908809 gaaaattaaatgtttggatgatgaagggaaaatagtaggttaaaattagggttaccaatagcttgatcagacaagcttta 3908888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 15700808 - 15700721
Alignment:
Q  113 aattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    |||| ||||||||  |||||||||||||||| ||| ||||||||||||| |  ||| |||||| || |||| ||||||||| ||||||    
T  15700808 aatttaatgcttgtaggatggagggaaaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 46555572 - 46555502
Alignment:
Q  131 tggagggaaaatattagtttaa-aattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||| |||| ||||||||| |  ||| |||||| | ||||||||||||||| ||||||    
T  46555572 tggagggaaaatattaggttaagaattagggttactaatagcttgaccggacaagctttagtaataaagat 46555502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 39742297 - 39742364
Alignment:
Q  133 gagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||| |||| |||||||| | |||| ||||||||| |||||||||||||| ||||||    
T  39742297 gagggaaaatattaggttaagattagggttatcaatagcttgatcaaacaagctttagtaagaaagat 39742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 48850795 - 48850726
Alignment:
Q  130 atggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    |||||||||||| ||||| |||| |||||||| |||||| ||||||||||||||||||||| || ||||||    
T  48850795 atggagggaaaa-attaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaagat 48850726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 6253470 - 6253382
Alignment:
Q  111 aaaattaaatgcttgagggatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaaga 199  Q
    ||||||||||| ||  | |||||||||||||  |||| ||| ||||||| | |||||||||||||| | |||||||||||||| |||||    
T  6253470 aaaattaaatgtttaggtgatggagggaaaaatttaggttagaattaggttaaacaattgcttgattaaacaagctttagtaagaaaga 6253382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 20077341 - 20077412
Alignment:
Q  129 gatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagat 200  Q
    ||||||||||||||||||| |||||||||||||     ||||||||| || |||||||||||||| ||||||    
T  20077341 gatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagctttagtaagaaagat 20077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 4407848 - 4407774
Alignment:
Q  129 gatggagggaaaatattagtttaaaattagggtgaacaattgcttgatcagacaagctttagtaaaaaagatgatct 205  Q
    ||||||||||||||||||| |||||||||||||     ||||||||| |||||  |||||||||| |||||| ||||    
T  4407848 gatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagac--gctttagtaagaaagattatct 4407774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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