View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20667_low_2 (Length: 588)
Name: NF20667_low_2
Description: NF20667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20667_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 575
Target Start/End: Original strand, 4633526 - 4634099
Alignment:
| Q |
16 |
caatatcaatcaatgtccatatatttaaggatctaaaaatagtaatcaacccaaacaattataacaattaaattaactatgcaatgaaaattaaggatat |
115 |
Q |
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| T |
4633526 |
caatatcaatcaatgtccatatatttaaggatctaaaaatagtaatcaacccaaacaattataacaattaaattaactatgcaatgaaaattaaggatat |
4633625 |
T |
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| Q |
116 |
tttagtgaaattttaggaaaactcacatcataagcctcattgatcaagtgaaactgcgccccacaatctcttcctttgcactcatctggatggtactgaa |
215 |
Q |
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| T |
4633626 |
tttagtgaaattttaggaaaactcacatcataagcttcattgatcaagtgaaactgcgccccacaatctcttcctttgcactcatctggatggtactgaa |
4633725 |
T |
|
| Q |
216 |
acacaaacaaaacccaaatattcatcaagaaaaacctaaaacaaatccaattacgatgccacatttttatatctatttagaaaatgtgcaactgcagcct |
315 |
Q |
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| T |
4633726 |
acacaaacaaaacccaaatattcatcaagaaaaacctaaaacaaatccaattacgatgccacatttttatatctatttagaaaatgtgcaactgcagcct |
4633825 |
T |
|
| Q |
316 |
ataaaaacatatcaac-------------atcaaaacaaaagcatcagttagtgctttcattcctttctgtacattgcacctacaaaagcatcagtcact |
402 |
Q |
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| T |
4633826 |
ataaaaacagatcaacatcaaactcaacaatcaaaacaaaagcatcaattagtgattttattcatttctgtacattgcacctacaaaagcatcagtcact |
4633925 |
T |
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| Q |
403 |
tatggtgttcaagttaaatgccaaccatcttatatgcctagtcatactttctattcacgcagttcaataatagacatcaactatggtttttgagccggca |
502 |
Q |
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| T |
4633926 |
tctggtgttcaagttaaatgccaaccatcttatatgcctagtcatactttctattcacgcagttcaataatagacatcaactatggtttttgagccggca |
4634025 |
T |
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| Q |
503 |
gcggtacttagcctaattgtttacatcaaaacatgacagtagaatttgt-atgctcatcaaatcatcaatagta |
575 |
Q |
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| T |
4634026 |
gcgctacttagcctaattgtttacatcaaaacatgacagtagaatttgtaatgctcatcaaatcatcaatagta |
4634099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 9e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 26 - 219
Target Start/End: Original strand, 1080736 - 1080929
Alignment:
| Q |
26 |
caatgtccatatatttaaggatctaaaaatagtaatcaacccaaacaattataacaattaaattaactatgcaatgaaaattaaggatattttagtgaaa |
125 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || |||| |
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| T |
1080736 |
caatatccatatattaaaggatctaaaaatagtaatcaacccaaacaattataacaattaaattaactatgcaataaaaattaaggatagttaagagaaa |
1080835 |
T |
|
| Q |
126 |
ttttaggaaaactcacatcataagcctcattgatcaagtgaaactgcgccccacaatctcttcctttgcactcatctggatggtactgaaacac |
219 |
Q |
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| T |
1080836 |
ttttaggaaaactcacatcataagcctcattgatcaagtgaaactgcaccccacaatctcttcctttgcacacatcaggatggtactgaaacac |
1080929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 332 - 575
Target Start/End: Original strand, 660190 - 660434
Alignment:
| Q |
332 |
atcaaaacaaaagcatcagttagtgctttcattcctttctgtacattgcacctacaaaagcatcagtca----cttatggtgttcaagttaaatgccaac |
427 |
Q |
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|||||||||||||||||||| ||||||| ||||| ||| |||||||||| | |||||||| ||| |||| ||||| |||||||||| ||||||||| |
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| T |
660190 |
atcaaaacaaaagcatcagtcagtgcttacattcatttttgtacattgcgcttacaaaaggatcggtcattcacttatagtgttcaagt-aaatgccaag |
660288 |
T |
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| Q |
428 |
catcttatatgcctagtcatactttctattcacgcagttcaataatagacatcaactatggtttttgagccggcagcggtacttagcctaattgtttaca |
527 |
Q |
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| T |
660289 |
cattttatatgc--agtcatagattagattcacgcagttcaataatgaacatcaaccatggtttttgagccggcagcgctacttagcctaattgtttaca |
660386 |
T |
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| Q |
528 |
tcaaaacatgacagtagaatttgtatgctcatcaaatcatcaatagta |
575 |
Q |
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| T |
660387 |
acaaaacatgacagtagaatttgtatgctcatcaaatcatcaatagta |
660434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 330
Target Start/End: Original strand, 660140 - 660175
Alignment:
| Q |
295 |
gaaaatgtgcaactgcagcctataaaaacatatcaa |
330 |
Q |
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| T |
660140 |
gaaaatgtgcaactgcagcctataaaaacagatcaa |
660175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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