View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20667_low_4 (Length: 537)
Name: NF20667_low_4
Description: NF20667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20667_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 1607381 - 1607896
Alignment:
| Q |
18 |
accacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtg |
117 |
Q |
| |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607381 |
accacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtg |
1607480 |
T |
|
| Q |
118 |
acgaatccagatattttgattaatatgactatatatat--tcatataaaa-gtacataagcgatagtgttatgacatcaatattatcatatgaatcaaat |
214 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607481 |
acgaatccagaaattttgattagtatgactatatatatattcatataaaaagtacataagcgatagtgttatgacatcaatattatcatatgaatcaaat |
1607580 |
T |
|
| Q |
215 |
gtaaatctggagattacaaaattttaacannnnnnnnaggaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattata |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1607581 |
ttaaatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattata |
1607680 |
T |
|
| Q |
315 |
attgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacatt |
414 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607681 |
attgctctttgtgtcttgttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacatt |
1607780 |
T |
|
| Q |
415 |
caataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagtacaatacttaaattttaaatagaaaaatataaaatcatt |
514 |
Q |
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| |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1607781 |
ccataatttatctttcatttaattcttcctaaataaagttattgaataactttttagcagcacaatacttaaattttaaatagaaaaatataaaatcatt |
1607880 |
T |
|
| Q |
515 |
gttagtacctttgcta |
530 |
Q |
| |
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|||||||||||||||| |
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| T |
1607881 |
gttagtacctttgcta |
1607896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 1630377 - 1630852
Alignment:
| Q |
18 |
accacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1630377 |
accacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttgaaaatgacccttcttctgtttctgcaagtg |
1630476 |
T |
|
| Q |
118 |
acgaatccagatattttgattaatatgactatatatattcatataaaagtacataagcgatagtgttatgacatcaatattatcatatgaatcaaatgta |
217 |
Q |
| |
|
||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
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|
| T |
1630477 |
acgaatccaaaatttttgattagtatgactatatatattcatataaaagtacataagcgatagtgctatgacttcaatattattatatgaatcaaatgta |
1630576 |
T |
|
| Q |
218 |
aatctggagattacaaaattttaacannnnnnnnaggaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1630577 |
aatctggagattacaaaattttaacattttttttaggaaaaaattaaaacattatatacctaaaatattgaatatacttgaacatctacacattataatt |
1630676 |
T |
|
| Q |
318 |
gctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacattcaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
1630677 |
gctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacactcaa |
1630776 |
T |
|
| Q |
418 |
taatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagtacaatacttaaattttaa |
493 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630777 |
taatttatctttcatttaattcttcctgaataaagttattgaataaccttttagcagtacaatacttaaattttaa |
1630852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Original strand, 1624402 - 1624900
Alignment:
| Q |
18 |
accacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtg |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624402 |
accacaagattgtactttactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtg |
1624501 |
T |
|
| Q |
118 |
acgaatccagatattttgattaatatgactatatatattcatataaaagtacataagcgatagtgttatgacatcaatattatcatatgaatcaaatgta |
217 |
Q |
| |
|
||| ||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |
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| T |
1624502 |
acggatccagaaattttgattagtatgactatatata--------aaagtacataagccatagtgttatgacatcaatattatcatatgaattaaattta |
1624593 |
T |
|
| Q |
218 |
aatctggagattacaaaattttaacannnnnnnnaggaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1624594 |
aatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataatt |
1624693 |
T |
|
| Q |
318 |
gctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacattcaa |
417 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624694 |
gctct--gtgtcttcttattttaaaattcatttttatatacccatttttaaccctatcatatttatattactctatgtatgtcacaaaataaacattcaa |
1624791 |
T |
|
| Q |
418 |
taatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgtt |
517 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
1624792 |
taatttatctttcatttaattcttcctaaataaagttattgaataattttttagcagtacaatactt-aattttaaatagaaaaaaataaaatcattgtt |
1624890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 10819902 - 10819711
Alignment:
| Q |
18 |
accacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgacccttc------ttctgtttctg |
111 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
10819902 |
accacaagattgaacttcattggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaagtgacccttcttctatttctgtttctg |
10819803 |
T |
|
| Q |
112 |
caagtgacgaatccagatattttgattaatatgactatatatattcatat-aaaagtacataagcgatagtgttatgacatcaatattatcat |
203 |
Q |
| |
|
||| ||||| ||||||| |||| ||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10819802 |
caa-tgacggatccagaaatttagattagtatgactatatatatttatataaaaagtacataagcgatagtgttatgacatcaatattatcat |
10819711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 254 - 368
Target Start/End: Complemental strand, 10819635 - 10819521
Alignment:
| Q |
254 |
gaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcattttta |
353 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||| | |||||||| |||||||||| ||||||||||||| ||||||||||||| |||||| |
|
|
| T |
10819635 |
gaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaaaattctttttta |
10819536 |
T |
|
| Q |
354 |
tcttcccattttcaa |
368 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
10819535 |
gcttcccgttttcaa |
10819521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 484 - 530
Target Start/End: Original strand, 1631340 - 1631386
Alignment:
| Q |
484 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1631340 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
1631386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 355
Target Start/End: Original strand, 1602996 - 1603086
Alignment:
| Q |
261 |
ttaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatc |
355 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | ||| |||| ||||||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
1602996 |
ttaaaacattatatacctaaaaaattgaagatacttcatcatatacaaattataattgc----tgtgtcttcatattttaaaattattttttatc |
1603086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 466 - 524
Target Start/End: Complemental strand, 10819219 - 10819162
Alignment:
| Q |
466 |
ttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagtacct |
524 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10819219 |
ttttagcactacaatacttac-ttttaaatagaaaaaaataaaatcattgttagtacct |
10819162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 18785428 - 18785528
Alignment:
| Q |
18 |
accacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtg |
117 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18785428 |
accacaatattgtactttactggagacttagactgcaaaagcttcctttcatgcatagaaaaccaatttggaaatgacccttcttctgtttctgcaagtg |
18785527 |
T |
|
| Q |
118 |
a |
118 |
Q |
| |
|
| |
|
|
| T |
18785528 |
a |
18785528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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