View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20667_low_5 (Length: 487)

Name: NF20667_low_5
Description: NF20667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20667_low_5
NF20667_low_5
[»] chr2 (12 HSPs)
chr2 (127-470)||(40018134-40018477)
chr2 (16-127)||(16294716-16294826)
chr2 (16-127)||(31626366-31626477)
chr2 (18-127)||(40017794-40017902)
chr2 (16-127)||(23673662-23673773)
chr2 (16-127)||(31528206-31528316)
chr2 (17-124)||(32576005-32576112)
chr2 (16-127)||(13709887-13709998)
chr2 (119-211)||(31528537-31528629)
chr2 (16-127)||(36326739-36326854)
chr2 (119-211)||(13710218-13710309)
chr2 (119-207)||(31626698-31626784)
[»] chr5 (18 HSPs)
chr5 (16-127)||(26712660-26712771)
chr5 (16-127)||(26982398-26982509)
chr5 (16-127)||(14616746-14616857)
chr5 (16-127)||(33574905-33575016)
chr5 (16-127)||(34405665-34405776)
chr5 (16-127)||(15532519-15532629)
chr5 (16-127)||(22159561-22159672)
chr5 (16-127)||(15542701-15542811)
chr5 (16-121)||(7650259-7650364)
chr5 (121-211)||(26711470-26711559)
chr5 (121-211)||(26981207-26981296)
chr5 (119-209)||(33575236-33575326)
chr5 (119-211)||(15532206-15532298)
chr5 (119-211)||(15542388-15542480)
chr5 (47-127)||(11989166-11989246)
chr5 (126-211)||(22159901-22159986)
chr5 (163-211)||(11988868-11988916)
chr5 (16-70)||(13371932-13371986)
[»] chr3 (8 HSPs)
chr3 (16-127)||(39563828-39563939)
chr3 (16-127)||(22626629-22626740)
chr3 (17-127)||(13979303-13979413)
chr3 (16-127)||(11138887-11138998)
chr3 (119-211)||(11138576-11138668)
chr3 (119-211)||(22626318-22626410)
chr3 (121-211)||(39563516-39563605)
chr3 (16-125)||(35366195-35366304)
[»] scaffold0063 (1 HSPs)
scaffold0063 (16-127)||(7310-7421)
[»] chr1 (15 HSPs)
chr1 (16-127)||(32506172-32506283)
chr1 (16-127)||(13493079-13493190)
chr1 (16-127)||(27282425-27282536)
chr1 (17-127)||(23990407-23990517)
chr1 (16-127)||(13495804-13495915)
chr1 (16-127)||(39546059-39546170)
chr1 (16-127)||(34066161-34066272)
chr1 (16-125)||(22453453-22453562)
chr1 (16-127)||(22104689-22104798)
chr1 (16-124)||(21153075-21153183)
chr1 (16-125)||(22456809-22456917)
chr1 (16-125)||(15297151-15297260)
chr1 (29-127)||(1936444-1936541)
chr1 (16-85)||(16190496-16190569)
chr1 (157-211)||(1936814-1936868)
[»] scaffold0500 (1 HSPs)
scaffold0500 (16-127)||(2508-2619)
[»] chr7 (25 HSPs)
chr7 (16-127)||(17863412-17863523)
chr7 (16-127)||(17866671-17866782)
chr7 (18-127)||(33312811-33312920)
chr7 (16-127)||(6966964-6967075)
chr7 (16-127)||(24783225-24783336)
chr7 (16-125)||(46846630-46846739)
chr7 (16-127)||(36843255-36843366)
chr7 (221-449)||(22796405-22796642)
chr7 (17-127)||(23107804-23107914)
chr7 (16-127)||(11279309-11279419)
chr7 (16-127)||(23759927-23760037)
chr7 (16-127)||(294681-294792)
chr7 (119-217)||(295008-295106)
chr7 (16-127)||(36222626-36222731)
chr7 (119-217)||(11279639-11279736)
chr7 (16-111)||(23313578-23313673)
chr7 (123-211)||(23759615-23759703)
chr7 (119-218)||(36222308-36222406)
chr7 (16-125)||(9765611-9765720)
chr7 (16-83)||(3862216-3862287)
chr7 (119-209)||(46846320-46846409)
chr7 (119-211)||(33313143-33313233)
chr7 (51-85)||(27796693-27796727)
chr7 (49-85)||(2719402-2719438)
chr7 (119-211)||(3861913-3862005)
[»] chr6 (19 HSPs)
chr6 (16-127)||(14790435-14790546)
chr6 (16-127)||(14795463-14795574)
chr6 (24-127)||(32704580-32704683)
chr6 (16-127)||(13017508-13017618)
chr6 (220-449)||(15870354-15870592)
chr6 (16-127)||(22221540-22221651)
chr6 (16-127)||(22247375-22247486)
chr6 (16-125)||(12983696-12983805)
chr6 (16-127)||(15538038-15538149)
chr6 (16-127)||(20527481-20527591)
chr6 (15-123)||(19664981-19665089)
chr6 (16-127)||(1838291-1838402)
chr6 (16-127)||(16883493-16883603)
chr6 (39-127)||(32427183-32427271)
chr6 (16-123)||(12980809-12980916)
chr6 (119-211)||(13017195-13017287)
chr6 (16-77)||(15534923-15534984)
chr6 (119-209)||(22221869-22221959)
chr6 (119-209)||(22247704-22247794)
[»] chr4 (8 HSPs)
chr4 (16-127)||(647521-647632)
chr4 (16-127)||(650793-650904)
chr4 (16-127)||(12171799-12171910)
chr4 (16-127)||(26063011-26063122)
chr4 (16-126)||(26060405-26060515)
chr4 (119-211)||(12172119-12172212)
chr4 (119-211)||(2542030-2542122)
chr4 (16-125)||(2541703-2541812)
[»] scaffold0440 (2 HSPs)
scaffold0440 (16-127)||(9679-9790)
scaffold0440 (119-209)||(10010-10101)
[»] scaffold0352 (1 HSPs)
scaffold0352 (16-127)||(2921-3032)
[»] scaffold0264 (2 HSPs)
scaffold0264 (16-127)||(24501-24612)
scaffold0264 (119-209)||(24193-24283)
[»] scaffold0567 (1 HSPs)
scaffold0567 (16-127)||(6128-6239)
[»] chr8 (5 HSPs)
chr8 (16-127)||(13096838-13096949)
chr8 (20-127)||(44008118-44008224)
chr8 (21-127)||(12575623-12575728)
chr8 (16-77)||(41779059-41779120)
chr8 (119-217)||(12575300-12575398)
[»] scaffold0665 (1 HSPs)
scaffold0665 (55-127)||(1-73)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 127 - 470
Target Start/End: Original strand, 40018134 - 40018477
Alignment:
Q  127 aaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatattcatcactctttgcc 226  Q
    ||||||| ||||  |||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  40018134 aaattgccaagtcgaagttaaatgcactccttgtgaaaacaaattttttattacttcgattgaatttggttcacttgccaaatattcatcactctttacc 40018233  T
Q  227 attgagtagttcttccttgtttgttggaactccacgtacgatagaggagcggtacctgcattacaaaacatcaaatcaaggttgaagaatgactgataca 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40018234 attgagtagttcttccttgtttgttggaactccacgtacgatagaggagcggtacctgcattacaaaacatcaattcaaggttgaagaatgactgataca 40018333  T
Q  327 gtacagaaagaaacatattgttgcatagcttggtgcggagagatttgtcaaagaacagttcagctgcaacaaggagcatacataataatcacacatcacg 426  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40018334 gtacagaaacaaacatattgttgcatagcttggtgcggagagatttgtcaaagaacagttcagctgcaacaaggaacatacataataatcacacatcacg 40018433  T
Q  427 aatcaacaataaattgaaaacaatatgtcaaatagcattaatta 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  40018434 aatcaacaataaattgaaaacaatatgtcaaatagcattaatta 40018477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 16294826 - 16294716
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||     
T  16294826 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggtatt-aaagaacgttaatccctatgtcata 16294728  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  16294727 acctaataatga 16294716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 31626477 - 31626366
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||     
T  31626477 tcttgacctagaattctccctgcaagtgacaaccccttaatctcttaagtgaattcgaaatcgttggaggtattaaaagaacgttaatccttatgttata 31626378  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  31626377 acctaataatga 31626366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 40017902 - 40017794
Alignment:
Q  18 ttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatgac 117  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  40017902 ttgacctagaattctccccgcaagtgacaaccc-ttattctcttaagtgaattcgaaactgttggaggtattaaaagaacgttaattcatatgtcatgac 40017804  T
Q  118 ctaataatga 127  Q
    ||||||||||    
T  40017803 ctaataatga 40017794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 23673662 - 23673773
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||| ||||||||     
T  23673662 tcttgacctagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaacagttggaggttttaacagaacgttaatccctatgtcata 23673761  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  23673762 acctaataatga 23673773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 31528316 - 31528206
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| || |||||||||||| ||| ||||     
T  31528316 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccaatggaggtatt-aacgaacgttaatccctatatcata 31528218  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  31528217 acctaataatga 31528206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 32576005 - 32576112
Alignment:
Q  17 cttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatga 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||  |||||||| ||||||||||||||||||| |||||| | |    
T  32576005 cttgacctagaattctccccacaagtgacaaccccttaatctcttgactgaattcgaaattgttggaggtattaaaagaacgttaatccctatgtcgtaa 32576104  T
Q  117 cctaataa 124  Q
    ||||||||    
T  32576105 cctaataa 32576112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 13709998 - 13709887
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||| | |||||||||| |||||||||||||| ||||||||| ||||||||||||| |||||||||  |||| | ||||||||||| ||||||||     
T  13709998 tcttgacccataattctcccctcaagtgacaaccccataatctctttagtgaattcgaaatcgttggaggttttaacaaaacgttaatccctatgtcata 13709899  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  13709898 acctaataatga 13709887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 31528537 - 31528629
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||||| ||||||||| || |||| ||| |||| |||||||||||||||| || ||||||||||||||||||||||||    
T  31528537 taataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgccaaatat 31528629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 36326854 - 36326739
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattc----gaaaccgttggaggcattaaaagaacgttaatccatatgt 111  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||     ||||| |||||||| ||||| ||||||||||||| | |||    
T  36326854 tcttgacctagaattctccctgcaagtgacaactccttaatctcttaagtgaattaatttgaaactgttggaggtattaacagaacgttaatccctgtgt 36326755  T
Q  112 catgacctaataatga 127  Q
    |||  |||||||||||    
T  36326754 catagcctaataatga 36326739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 13710218 - 13710309
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||||| ||||||||| || | || || |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  13710218 taataatgaaattgctaagtagaagttaaatacagttctcgtaaaaacgaatttt-tattacttcgattgaatttggttcacttgccaaatat 13710309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 31626698 - 31626784
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaa 207  Q
    ||||||||||||||||||||| ||||||| | || ||||  |  ||||||||||| ||||||||| |||||||||||||||||| ||||    
T  31626698 taataatgaaattgctaagtagaagttaa-tacagtcctcattgaaacgaatttt-tattacttcgattgaatttggttcacttaccaa 31626784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 26712660 - 26712771
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||     
T  26712660 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggtattaaaagaacgttaatccctatgtcata 26712759  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  26712760 acctaataatga 26712771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 26982398 - 26982509
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||     
T  26982398 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggtattaaaagaacgttaatccctatgtcata 26982497  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  26982498 acctaataatga 26982509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 14616746 - 14616857
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||  |||| | ||||||||||||||||||||     
T  14616746 tcttgacctataattctccccgcaagtgacaagcccttaatctcttgagtgaattcgaaaccgttggaggttttaacaaaacgttaatccatatgtcata 14616845  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  14616846 acctaataatga 14616857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 33575016 - 33574905
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||| ||| ||||     
T  33575016 tcttgatctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccattggaggtattaaacgaatgttaatccctatatcata 33574917  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  33574916 acctaataatga 33574905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 34405776 - 34405665
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||| ||| ||||     
T  34405776 tcttgacctagaattctcctcgcatgtgacaaccccttaatctcttaagtgaattcaaaaccgttggaggttttaaaagaacgttaatccctatctcata 34405677  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  34405676 acctaataatga 34405665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 15532519 - 15532629
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||| || |||||||||||| ||| ||||     
T  15532519 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccaatggaggtatt-aacgaacgttaatccctatatcata 15532617  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  15532618 acctaataatga 15532629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 22159672 - 22159561
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||  |||| ||||||||||||| ||||||||     
T  22159672 tcttgacctagagttctccccacaagtaacaaccccttaatctcttaagtgaattcgaaaccattggaggttttaacagaacgttaatccctatgtcata 22159573  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  22159572 acctaataatga 22159561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 15542701 - 15542811
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||| ||| || |||||||||||| ||| ||||     
T  15542701 tcttgacctagaattctccccgcaagtgacaaccccttgatctcttaagtgaattcgaaaccaatggaggtatt-aacgaacgttaatccctatatcata 15542799  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  15542800 acctaataatga 15542811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 7650259 - 7650364
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||  |||| |||| |||||||| ||||||||     
T  7650259 tctttacctagaattctccccgcaagtgacaaccccttaatctcttgagtgaattcgaaatcgctggaggttttaatagaaggttaatccctatgtcata 7650358  T
Q  116 acctaa 121  Q
    ||||||    
T  7650359 acctaa 7650364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 26711559 - 26711470
Alignment:
Q  121 ataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||| ||||||| | || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26711559 ataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 26711470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 26981296 - 26981207
Alignment:
Q  121 ataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||| ||||||| | || |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26981296 ataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 26981207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 33575236 - 33575326
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaat 209  Q
    ||||||| |||||||||| || ||||||||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33575236 taataataaaattgctaaatagaagttaaatacagtcctcgtgaaaacgaattttttattacttcgattgaatttggttcacttgccaaat 33575326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 15532298 - 15532206
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||||| ||||||||| || |||| ||| ||||||||||||||||||||| || ||||||||||||| ||||||||||    
T  15532298 taataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaattttttattacttcgatcgaatttggttcacatgccaaatat 15532206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 15542480 - 15542388
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    |||||||||||||| |||||| ||||||||| || |||| ||| ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  15542480 taataatgaaattgttaagtagaagttaaatacagtcctcgtggaaacgaattttttattacttcgatcgaatttggttcacttgccaaatat 15542388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 11989166 - 11989246
Alignment:
Q  47 accccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatgacctaataatga 127  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||  ||||| |  ||||||||||||    
T  11989166 accccttaatctcttaagtgaattcgaaaccgttggaggttttaatagaacgttaatctctatgttaaaacctaataatga 11989246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 22159901 - 22159986
Alignment:
Q  126 gaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    |||||||||||||| ||||||||| || |||| ||| |||| |||||||||||||||| || ||||||||| |||||| |||||||    
T  22159901 gaaattgctaagtagaagttaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggtacacttgtcaaatat 22159986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 11988916 - 11988868
Alignment:
Q  163 aaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||| ||||||||||| |||||||||| |||||||| |||||||    
T  11988916 aaacgaattatttattacttcgattgaatttgattcacttgtcaaatat 11988868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 13371986 - 13371932
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaatt 70  Q
    ||||||| ||||| |||||||  |||| |||| ||||||||||||||||||||||    
T  13371986 tcttgacttagaactctcccctaaagtcacaatcccttaatctcttaagtgaatt 13371932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 39563828 - 39563939
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||     
T  39563828 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggtattaaaagaacgttaatccctatgtcata 39563927  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  39563928 acctaataatga 39563939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 22626629 - 22626740
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||| ||||     
T  22626629 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccattggaggtattaaacgaacgttaatccctatatcata 22626728  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  22626729 acctaataatga 22626740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 13979413 - 13979303
Alignment:
Q  17 cttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatga 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||| |    
T  13979413 cttgacctagaattctccccgcaagtgacaacctcttaatctcttaagtgaattcgaaatcgttcgaggtattaaaagaacgttaatccctatgtcataa 13979314  T
Q  117 cctaataatga 127  Q
    |||||||||||    
T  13979313 cctaataatga 13979303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 11138887 - 11138998
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||| |||||||||||| ||| ||||     
T  11138887 tcttgacctagaattctccccgcaagtgacaactccttaatctcttaagtgaattcgaaaccataggaggtattaaacgaacgttaatccctatatcata 11138986  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  11138987 acctaataatga 11138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 11138668 - 11138576
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||||| ||||||||| || |||| ||| ||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  11138668 taataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaactttttattacttcgatcgaatttggttcacttgccaaatat 11138576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 22626410 - 22626318
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||||| ||||||||| || |||| ||| ||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  22626410 taataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgaactttttattacttcgatcgaatttggttcacttgccaaatat 22626318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 39563605 - 39563516
Alignment:
Q  121 ataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||| ||||||| | || |||| ||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  39563605 ataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattactttgattgaatttggttcacttgccaaatat 39563516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 35366304 - 35366195
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||| |||| |||| |||||||| ||||||||||||||||||||||| | ||  |||||||  |||| ||  |||||||||||  |||||     
T  35366304 tcttgacctagaactctctccgcgagtgacaatcccttaatctcttaagtgaattcaagactcttggaggttttaacagtccgttaatccatgagtcata 35366205  T
Q  116 acctaataat 125  Q
     |||||||||    
T  35366204 gcctaataat 35366195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 7310 - 7421
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||     
T  7310 tcttgacttagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggtattaaaagaacgttaatccctatgtcata 7409  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  7410 acctaataatga 7421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 32506172 - 32506283
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||     
T  32506172 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggtattaacagaacgttaatccctatgtcata 32506271  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  32506272 acctaataatga 32506283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 13493190 - 13493079
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| ||||||||     
T  13493190 tcttgacctagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaacagaacgttaatccctatgtcata 13493091  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  13493090 acctaataatga 13493079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 27282425 - 27282536
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||  |||||||||||||||||| ||||||||     
T  27282425 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcaaaatcgttggaggttttaaaagaacgttaatccctatgtcata 27282524  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  27282525 acctaataatga 27282536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 23990407 - 23990517
Alignment:
Q  17 cttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatga 116  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||| ||||||||||||| |||||||| |    
T  23990407 cttgacctagaattctccccgcaagtgacaaccccttaaactcttaagtgaattcgaaaccgttggaggttttaacagaacgttaatccctatgtcataa 23990506  T
Q  117 cctaataatga 127  Q
    |||||||||||    
T  23990507 cctaataatga 23990517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 13495915 - 13495804
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||||||| ||||||||     
T  13495915 tcttgacctagaattctacccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttagcagaacgttaatccctatgtcata 13495816  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  13495815 acctaataatga 13495804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 39546170 - 39546059
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||||| ||||||||     
T  39546170 tcttgacctagaattctccccgcaagtaacaaccccttaatctcttaagtgaattcgaaatcgttggaggttttaatagaacgttaatccctatgtcata 39546071  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  39546070 acctaataatga 39546059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 34066272 - 34066161
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||  ||||||||     
T  34066272 tcttgaccttgaattctctccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaacagaacgttaatctctatgtcata 34066173  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  34066172 acctaataatga 34066161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 22453453 - 22453562
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| ||  |||||||||||  |||||     
T  22453453 tcttgacctagaattctctccgcaagtgacaaccccttaatctcttaagtgaattcgaaactgttggaggttttaacagtccgttaatccatgagtcata 22453552  T
Q  116 acctaataat 125  Q
    ||||||||||    
T  22453553 acctaataat 22453562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 22104689 - 22104798
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||| ||||||||  || |||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||| ||||||||     
T  22104689 tcttgacctagaattctccccgtaagtgacagacc-ttaatctcttaagtgaattcaaaatcgttggaggtatt-aaagaacgttaatccctatgtcata 22104786  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  22104787 acctaataatga 22104798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 21153183 - 21153075
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||  |||| ||  ||||||||| ||  ||||     
T  21153183 tcttgacctagaattctctccgcaagtgacaaccccttaatctcttaagtgaatttgaaacctttggaggttttaatagtccgttaatccctaaatcata 21153084  T
Q  116 acctaataa 124  Q
    |||||||||    
T  21153083 acctaataa 21153075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 22456809 - 22456917
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||||||  |||| ||  |||||||||||  |||||     
T  22456809 tcttgacctagaattctctccgcaagtgacaactc-ttaatctcttaagtgaattcgaaactgttggaggttttaacagtccgttaatccatgagtcata 22456907  T
Q  116 acctaataat 125  Q
    ||||||||||    
T  22456908 acctaataat 22456917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 15297260 - 15297151
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||| | |||||||||||||| | ||||||||||||||||| ||||| ||||||||  |||| ||  |||||||||||  |||||     
T  15297260 tcttgacctagaattctctctgcaagtgacaacccttaaatctcttaagtgaatttgaaactgttggaggttttaacagtccgttaatccatgagtcata 15297161  T
Q  116 acctaataat 125  Q
    ||||||||||    
T  15297160 acctaataat 15297151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 1936541 - 1936444
Alignment:
Q  29 ttctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatgacctaataatga 127  Q
    |||||||||||||| |||| |||||||||||||||||||||| |||| |||| ||||  ||||||||| |||| ||| |||||||| ||||||||||||    
T  1936541 ttctccccgcaagtaacaatcccttaatctcttaagtgaatttgaaa-cgtttgaggttttaaaagaatgttattccctatgtcataacctaataatga 1936444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 16190496 - 16190569
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaa----tctcttaagtgaattcgaaaccgttggagg 85  Q
    |||||||| | |||||||||| | ||||||||||||||||    ||||||||||||||||||||||||||||||    
T  16190496 tcttgacccataattctccccacgagtgacaaccccttaattaatctcttaagtgaattcgaaaccgttggagg 16190569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 1936814 - 1936868
Alignment:
Q  157 ttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||| ||| ||||| || |||||||| |||||||||||||||||||||||||||    
T  1936814 ttgtggaaatgaattattcattacttcgattgaatttggttcacttgccaaatat 1936868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 2619 - 2508
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||     
T  2619 tcttgacctagaattctccccgcaagtgacaacccctaaatctcttaagtgaattcgaaaccgttggaggtattaaaagaacgttgatccctatgtcata 2520  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  2519 acctaataatga 2508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 17863412 - 17863523
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||     
T  17863412 tcttgacctagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaaaagaacgttaatccctatgtcata 17863511  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  17863512 acctaataatga 17863523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 17866671 - 17866782
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||     
T  17866671 tcttgacctagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaaaagaacgttaatccctatgtcata 17866770  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  17866771 acctaataatga 17866782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 33312920 - 33312811
Alignment:
Q  18 ttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatgac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||||||||||||| ||    
T  33312920 ttgacctagaattctccccgcaagtgacaaccccttaatctcttaaatgaattcgaaaccggcggaggtattaaaagaacgttaatccatatgtcataac 33312821  T
Q  118 ctaataatga 127  Q
    ||||||||||    
T  33312820 ctaataatga 33312811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 6967075 - 6966964
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||     
T  6967075 tcttaacctagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaaaagaacgttaatccctatgtcata 6966976  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  6966975 acctaataatga 6966964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 24783336 - 24783225
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||| ||||||||     
T  24783336 tcttgacctagaattctctccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggagattttaacagaacgttaatccctatgtcata 24783237  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  24783236 acctaataatga 24783225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 46846630 - 46846739
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  |||||||| ||||||||| ||||||||     
T  46846630 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaactgaattcgaaaacgttggaggttttaaaagatcgttaatccctatgtcata 46846729  T
Q  116 acctaataat 125  Q
    ||||||||||    
T  46846730 acctaataat 46846739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 36843255 - 36843366
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||| ||||||||||||| ||||||||     
T  36843255 tcttgacctagagttctccccgcaagtaacaaccccttaatctcttaagtgaattcgaaaccattggaggttttaacagaacgttaatccctatgtcata 36843354  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  36843355 acctaataatga 36843366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 221 - 449
Target Start/End: Complemental strand, 22796642 - 22796405
Alignment:
Q  221 tttgccattgagtagttcttccttgtttgttggaactccacgtacgatagaggagcggtacctgcattacaa-------aacatcaaatcaaggttgaag 313  Q
    ||||||||||||||||||| ||| ||||||||||||||| | ||||| |||| ||| || ||| ||||||||       ||||||||  || |||  |||    
T  22796642 tttgccattgagtagttctgcctagtttgttggaactccgcatacgaaagagcagcagtgcctacattacaatttacaaaacatcaatccacggtcaaag 22796543  T
Q  314 aatgactgatacagtac---agaaagaaacatattgttgcatagcttggtgcggagagatttgtcaaagaacagttcagctgcaacaaggagcatacata 410  Q
    |||||||||||||||||   |||||||||  ||   | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||||| ||||    
T  22796542 aatgactgatacagtaccacagaaagaaagttaccatcgcatagcttggtgcggagagctttgtcaaagaaaggttcagctgcaac-aggagcatgcata 22796444  T
Q  411 ataatcacacatcacgaatcaacaataaattgaaaacaa 449  Q
    |||| ||| |||||| ||||| |||||||||||||||||    
T  22796443 ataagcactcatcacaaatcagcaataaattgaaaacaa 22796405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 23107914 - 23107804
Alignment:
Q  17 cttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatga 116  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||||||||||||||| |||||||| |    
T  23107914 cttgagctataattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaattgtttgaggtattaaaagaacgttaatccctatgtcataa 23107815  T
Q  117 cctaataatga 127  Q
    |||||||||||    
T  23107814 cctaataatga 23107804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 11279419 - 11279309
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||| || |||||||||||  ||||||||     
T  11279419 tcttgacctaggattctccccgcaagtgacaaccccttaatctcttaagtgaatctgaaaccgttggaggtatt-aatgaacgttaatctctatgtcata 11279321  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  11279320 acctaataatga 11279309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 23759927 - 23760037
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| || |||||||||||| ||| ||||     
T  23759927 tcttgccctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcaaaaccattggaggtatt-aacgaacgttaatccctatatcata 23760025  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  23760026 acctaataatga 23760037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 294792 - 294681
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||| |  |||| | ||||||||||| ||||||||     
T  294792 tcttgaactagaattctccccataagtgacaaccccttaatctcttaagtgaattcgaaactgttggatgttttaacaaaacgttaatccctatgtcata 294693  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  294692 acctaataatga 294681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 295008 - 295106
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatattcatca 217  Q
    ||||||||||||||||||||| ||||||||| || |||| ||| | || |||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  295008 taataatgaaattgctaagtagaagttaaatacagtcctcgtggacacaaattttttattacttcgattgaatttggttcacttgccaaatatccatca 295106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 36222626 - 36222731
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||| | |||  |||||||||||||  ||||||||     
T  36222626 tcttgacctagaattctcc-----agtgacaaccccttaatctcttaagtgaattcgaaaccgttggaagtatt-taagaacgttaatctctatgtcata 36222719  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  36222720 acctaataatga 36222731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 11279639 - 11279736
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatattcatca 217  Q
    ||||||||||||||||||||| || ||||||  | |||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  11279639 taataatgaaattgctaagtagaaattaaatatagtccttgtggaaacaaatttt-tattacttcgattgaatttggttcacttgccaaatattcatca 11279736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 23313578 - 23313673
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgt 111  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||||  |||| |||||||||| || |||||    
T  23313578 tcttggcctagaattctccccgcaagtggaaaccccttaatctcttaagtgaattcaaaatcgttggaggttttaacagaacgttaacccctatgt 23313673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 23759703 - 23759615
Alignment:
Q  123 aatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    |||||| |||||||||| ||||||||| || |||| ||  ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  23759703 aatgaatttgctaagtagaagttaaatacagtcctcgtagaaacgaactttttattacttcgattgaatttggttcacttgccaaatat 23759615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 36222406 - 36222308
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatattcatcac 218  Q
    ||||||||||||||||| ||| || |||||| || |||| |||  ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  36222406 taataatgaaattgctacgtagaaattaaatacaatcctcgtggtaacgaattttt-attacttcaattgaatttggttcatttgccaaatatccatcac 36222308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 9765720 - 9765611
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||| ||||||||| |||||| | |  ||||||||||||||||||||||||||||| || ||||  |||| | ||| ||| ||| ||||||||     
T  9765720 tcttgacctataattctccctgcaagtaaaatacccttaatctcttaagtgaattcgaaaccattagaggttttaacaaaacattagtccttatgtcata 9765621  T
Q  116 acctaataat 125  Q
    ||||||||||    
T  9765620 acctaataat 9765611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 3862216 - 3862287
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatc----tcttaagtgaattcgaaaccgttgga 83  Q
    |||||||||||||||||||||||||||||||||||||||||     |||||||||||||| |||| ||||||    
T  3862216 tcttgacctagaattctccccgcaagtgacaaccccttaattaatgtcttaagtgaattcaaaactgttgga 3862287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 46846409 - 46846320
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaat 209  Q
    ||||||||||||||||||||| || |||||| || |||| ||| ||||  |||||| |||||||| ||||||| || ||||||||||||||    
T  46846409 taataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacatattttt-attacttcgattgaatctgattcacttgccaaat 46846320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 33313143 - 33313233
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||||| ||||| ||| || |||| ||  ||||||| ||||||||||||| |||||||||| |||||||  |||||||    
T  33313143 taataatgaaattgctaagtagaagtt-aatacagtcctcgtagaaacgaa-tttttattacttcgattgaatttgtttcacttctcaaatat 33313233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 27796727 - 27796693
Alignment:
Q  51 cttaatctcttaagtgaattcgaaaccgttggagg 85  Q
    |||||||||||||||||||||||||||||||||||    
T  27796727 cttaatctcttaagtgaattcgaaaccgttggagg 27796693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 2719438 - 2719402
Alignment:
Q  49 cccttaatctcttaagtgaattcgaaaccgttggagg 85  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2719438 cccttaatctcttaagtgaattcaaaaccgttggagg 2719402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 3862005 - 3861913
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||||| |||||||   || |||| ||| | || |||| ||||||||||| ||||| | | || ||||||||||||||    
T  3862005 taataatgaaattgctaagtagaagttaataacaatcctcgtggatacaaattatttattacttcgattgactctagtacacttgccaaatat 3861913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 14790546 - 14790435
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||     
T  14790546 tcttgacctagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaaaagaacgttaatccctatgtcata 14790447  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  14790446 acctaataatga 14790435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 14795574 - 14795463
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||     
T  14795574 tcttgacctagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaaaagaacgttaatccctatgtcata 14795475  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  14795474 acctaataatga 14795463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 32704580 - 32704683
Alignment:
Q  24 tagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatgacctaata 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||    
T  32704580 tagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaaaagaacgttaatccctatgtcataacctaata 32704679  T
Q  124 atga 127  Q
    ||||    
T  32704680 atga 32704683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 13017508 - 13017618
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||| ||| ||||     
T  13017508 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccattggaggtatt-aacgaacgttaatccctatatcata 13017606  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  13017607 acctaataatga 13017618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 220 - 449
Target Start/End: Original strand, 15870354 - 15870592
Alignment:
Q  220 ctttgccattgagtagttcttccttgtttgttggaactccacgtacgatagaggagcggtacctgcattacaa-------aacatcaaatcaaggttgaa 312  Q
    |||||||||||||||||||| ||| ||||||||||||||| | |||||||||| ||| || ||| ||||||||       ||||||||  || | | |||    
T  15870354 ctttgccattgagtagttctgcctagtttgttggaactccgcatacgatagagcagcagtgcctacattacaatttacagaacatcaatccacgatcgaa 15870453  T
Q  313 gaatgactgatacagtac---agaaagaaacatattgttgcatagcttggtgcggagagatttgtcaaagaacagttcagctgcaacaaggagcatacat 409  Q
    |||||||||||| |||||   |||||||||  ||   | |||||||||||||||||||||||||| ||||||  ||||||||||||| ||||||| ||||    
T  15870454 gaatgactgatagagtaccacagaaagaaagttaccatagcatagcttggtgcggagagatttgttaaagaaaggttcagctgcaac-aggagcacacat 15870552  T
Q  410 aataatcacacatcacgaatcaacaataaattgaaaacaa 449  Q
    ||||| ||| |||||| ||||| |||||||||||||||||    
T  15870553 aataagcactcatcacaaatcagcaataaattgaaaacaa 15870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 22221651 - 22221540
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||||  ||||||||||||||| ||||     
T  22221651 tcttgacctagaattctccccgcaagtgacaaccccttaatctctcaagtgaattcgaaaccattagaggaattaaacaaacgttaatccatatatcata 22221552  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  22221551 acctaataatga 22221540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 22247486 - 22247375
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||||  ||||||||||||||| ||||     
T  22247486 tcttgacctagaattctccccgcaagtgacaaccccttaatctctcaagtgaattcgaaaccattagaggaattaaacaaacgttaatccatatatcata 22247387  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  22247386 acctaataatga 22247375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 12983696 - 12983805
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||  ||||||||||| ||||||     
T  12983696 tcttgaccttgaattctctccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaacagtccgttaatccatgtgtcata 12983795  T
Q  116 acctaataat 125  Q
    ||||||||||    
T  12983796 acctaataat 12983805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 15538149 - 15538038
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||  |||| ||||||||||||| ||||||||     
T  15538149 tcttgacctagagttctccccgcaagtaacaacaccttaatctcttaagtgaattcgaaaccattggaggttttaacagaacgttaatccctatgtcata 15538050  T
Q  116 acctaataatga 127  Q
    || |||||||||    
T  15538049 acttaataatga 15538038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 20527481 - 20527591
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||  |||| ||||||||||||| ||||||||     
T  20527481 tcttgacctagaattctccccgcaagtaacaaccc-ttaatctcttaagtgaatttgaaaccgttggaggttttaacagaacgttaatccctatgtcata 20527579  T
Q  116 acctaataatga 127  Q
    | ||||||||||    
T  20527580 atctaataatga 20527591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 19664981 - 19665089
Alignment:
Q  15 atcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcat 114  Q
    ||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| | ||||||   |||| ||||||||||||| ||||||||    
T  19664981 atcttgacctagagttctccccgcaagtaacatccccttaatctcttaagtgaattcgaaatcattggagattttaatagaacgttaatccctatgtcat 19665080  T
Q  115 gacctaata 123  Q
     ||||||||    
T  19665081 aacctaata 19665089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 1838402 - 1838291
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||   |||| | ||||||||||| ||||||||     
T  1838402 tcttgacctagagttctccccgcaagtaacaactccttaatctcttaagtgaatttgaaaccattggagattttaacataacgttaatccctatgtcata 1838303  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  1838302 acctaataatga 1838291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 16883603 - 16883493
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |||||||||||||  |||| ||||| ||||||| |||| |||     
T  16883603 tcttgacctagaattctccccacaagtggcaaccccttaatctcttatgtgaattcaaaaccgttggaggttttaacagaacattaatccctatg-catc 16883505  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  16883504 acctaataatga 16883493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 32427271 - 32427183
Alignment:
Q  39 aagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatgacctaataatga 127  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| |||||||| |||||||| || |||||||||    
T  32427271 aagtgacaaccccttaatctcttaagtgaattcaaaaccgttggaggtattaacagaatgttaatccctatgtcataacataataatga 32427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 12980809 - 12980916
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||  ||||||||  |||| ||  |||||||||||  |||||     
T  12980809 tcttgacctagaattctctccgcaagtgacaaccgcttaatctcttaagtgaattcgaaattgttggaggttttaacagtccgttaatccatgagtcata 12980908  T
Q  116 acctaata 123  Q
    ||||||||    
T  12980909 acctaata 12980916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 13017287 - 13017195
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||||| |||||||||  | |||| ||| ||||||| ||||||||||||| || ||||||||||||||||||||||||    
T  13017287 taataatgaaattgctaagtagaagttaaatatagtcctcgtggaaacgaactttttattacttcgatcgaatttggttcacttgccaaatat 13017195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 15534984 - 15534923
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaacc 77  Q
    |||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||    
T  15534984 tcttgacctagagttctccccgcaagtaacaacctcttaatctcttaagtgaattcgaaacc 15534923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 22221869 - 22221959
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaat 209  Q
    |||||||||||||||| |||| ||| |||||  | |||| ||| |||||||||| ||| |||||| || |  |||||| ||||||||||||    
T  22221869 taataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatttattactacttcgatagcttttggtacacttgccaaat 22221959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 22247704 - 22247794
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaat 209  Q
    |||||||||||||||| |||| ||| |||||  | |||| ||| |||||||||| ||| |||||| || |  |||||| ||||||||||||    
T  22247704 taataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatttattactacttcgatagcttttggtacacttgccaaat 22247794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 647521 - 647632
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||     
T  647521 tcttgacctagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaaaagaacgttaatccctatgtcata 647620  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  647621 acctaataatga 647632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 650793 - 650904
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||     
T  650793 tcttgacctagaattctccccgcatgtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggttttaaaagaacgttaatccctatgtcata 650892  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  650893 acctaataatga 650904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 12171910 - 12171799
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||| ||||     
T  12171910 tcttgacctacaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccattggaggtattaaacgaacgttaatccctatatcata 12171811  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  12171810 acctaataatga 12171799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 26063011 - 26063122
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||| |||||||| |||||||||||||     
T  26063011 tcttgacctagagttctccccgcaagtaacaaccccttaatctcttaagtgaattcgaaaccattggaggttttaacagaacgtttatccatatgtcata 26063110  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  26063111 acctaataatga 26063122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 26060515 - 26060405
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||| ||||||||     
T  26060515 tcttgacctagaattctccctgcaaataacaaccccttaatgtcttaagtgaattcgaaaccgttggaggttttaatagaacgttaatccctatgtcata 26060416  T
Q  116 acctaataatg 126  Q
    |||||||||||    
T  26060415 acctaataatg 26060405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 12172119 - 12172212
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaa-ttttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    ||||||||||||||||||||| ||||||||| || |||| ||| ||||||  |||||||||||||| || ||||||||||||||||||||||||    
T  12172119 taataatgaaattgctaagtagaagttaaatacagtcctcgtggaaacgatcttttttattacttcgatcgaatttggttcacttgccaaatat 12172212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 2542030 - 2542122
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatat 211  Q
    |||||||||||||||| |||| ||||||||| || |||| ||| | ||||||| ||||||||||| ||||| |||||| ||||||||||||||    
T  2542030 taataatgaaattgctcagtagaagttaaatacagtcctcgtggatacgaattatttattacttcgattgactttggtacacttgccaaatat 2542122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 2541812 - 2541703
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||| |||||| | || || | |||| || |||||||||||| ||||||| ||||| ||| |||  |||| ||  ||||||||| ||| ||||     
T  2541812 tcttgacctaaaattcttctcggaaataacaatccattaatctcttaaatgaattcaaaaccattgaaggttttaacagtccgttaatccctatatcata 2541713  T
Q  116 acctaataat 125  Q
    ||||||||||    
T  2541712 acctaataat 2541703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 9790 - 9679
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| ||| ||||     
T  9790 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccattggaggtattaaacgaacgttaatccctatatcata 9691  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  9690 acctaataatga 9679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 10010 - 10101
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaatt-ttttattacttcaattgaatttggttcacttgccaaat 209  Q
    ||||||||||||||||||||| ||||||||| || ||| || | ||||||||| |||||||||||| || ||||||| ||||||||||||||    
T  10010 taataatgaaattgctaagtagaagttaaatacagtccctgaggaaacgaattcttttattacttcgatcgaatttgattcacttgccaaat 10101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 2921 - 3032
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||| | ||||||     
T  2921 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcaaaactattggaggtattaaaagaacgttaatccttgtgtcata 3020  T
Q  116 acctaataatga 127  Q
    | ||||||||||    
T  3021 atctaataatga 3032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 24501 - 24612
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||  ||||||||||| ||| ||||     
T  24501 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttatgtgaattcgaaaccattggaggaattaaataaacgttaatccctatatcata 24600  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  24601 acctaataatga 24612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 24283 - 24193
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaat 209  Q
    |||||||||||||| | |||| ||||||||| || |||| ||| |||| ||||| ||| |||||| || |  |||||| ||||||||||||    
T  24283 taataatgaaattgttgagtagaagttaaatacagtcctcgtggaaacaaatttattactacttcgatagcttttggtacacttgccaaat 24193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 6128 - 6239
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||  |||| |||||||||| || ||||||||     
T  6128 tcttgatctagaattctccccgcaagtggcaaccccttaatctcttaagtgaattcaaaatcattggaggttttaacagaacgttaaaccctatgtcata 6227  T
Q  116 acctaataatga 127  Q
    ||||||||||||    
T  6228 acctaataatga 6239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 13096949 - 13096838
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatg 115  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||  |||| ||||||| ||||| ||||||||     
T  13096949 tcttggcctagaattctccccgcaagtgacaaccccttaatgtcttaagtgaatttgaaaccgtgggaggttttaacagaacgtaaatccctatgtcata 13096850  T
Q  116 acctaataatga 127  Q
    | ||||||||||    
T  13096849 atctaataatga 13096838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 44008224 - 44008118
Alignment:
Q  20 gacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatgacct 119  Q
    |||||||||||||||| |||||||||||| |||||||||| |||||||||| |||| ||||||||| ||||||||||||||||||| | |||| | ||||    
T  44008224 gacctagaattctccc-gcaagtgacaactccttaatctcataagtgaatttgaaatcgttggaggtattaaaagaacgttaatccctgtgtcgtaacct 44008126  T
Q  120 aataatga 127  Q
    || |||||    
T  44008125 aacaatga 44008118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 12575623 - 12575728
Alignment:
Q  21 acctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatgaccta 120  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||  |||| |  |||||||||| ||| |||| |||||    
T  12575623 acctagaattctccccgcaagtaacaaccc-ttaatctcttaagtgaattagaaaccattggaggttttaacaatacgttaatccttatatcataaccta 12575721  T
Q  121 ataatga 127  Q
    |||||||    
T  12575722 ataatga 12575728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 41779059 - 41779120
Alignment:
Q  16 tcttgacctagaattctccccgcaagtgacaaccccttaatctcttaagtgaattcgaaacc 77  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  41779059 tcttgacctagaattctccccgcaagtggcaaccccttaatatcttaagtgaattcaaaacc 41779120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 12575398 - 12575300
Alignment:
Q  119 taataatgaaattgctaagtaaaagttaaatgcattccttgtgaaaacgaattttttattacttcaattgaatttggttcacttgccaaatattcatca 217  Q
    |||||||||| ||| | |||| |||||||   || |||| ||| | ||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||    
T  12575398 taataatgaacttgttgagtagaagttaacaacagtcctcgtggatacgaattatttattacttcgattgaatttggtacacttgccaaatatttatca 12575300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 1 - 73
Alignment:
Q  55 atctcttaagtgaattcgaaaccgttggaggcattaaaagaacgttaatccatatgtcatgacctaataatga 127  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||||    
T  1 atctcttaagtgaattcgaaaccgttggaggttttaaaagaacgttaatccctatgtcataacctaataatga 73  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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