View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20667_low_6 (Length: 405)
Name: NF20667_low_6
Description: NF20667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20667_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 21371592 - 21371994
Alignment:
| Q |
1 |
atttgtgacctattaggtccacgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggtt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371592 |
atttgtgacctattaggtccgcgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggtt |
21371691 |
T |
|
| Q |
101 |
atatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaattattggacttgc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21371692 |
atatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtactatgtttaatagtaaaattattggacttgc |
21371791 |
T |
|
| Q |
201 |
taatggtactgctgctggttggggtaatatgggtggtggggccactcagcttattatgcctttggtgtatgaattgattagaagagctggtgctactcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371792 |
taatggtactgctgctggttggggtaatatgggtggtggggccactcagcttattatgcctttggtgtatgaattgattagaagagctggtgctactcct |
21371891 |
T |
|
| Q |
301 |
ttcactgcttggagaattgccttttttatccctggttggttgcatgttatcatgggtattatggtcttaacattaggccaagatttacctgatggtaacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371892 |
ttcactgcttggagaattgccttttttatccctggttggttgcatgttatcatgggtattatggtcttaacattaggccaagatttacctgatggtaacc |
21371991 |
T |
|
| Q |
401 |
ttg |
403 |
Q |
| |
|
||| |
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|
| T |
21371992 |
ttg |
21371994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 21385965 - 21385563
Alignment:
| Q |
1 |
atttgtgacctattaggtccacgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggtt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385965 |
atttgtgacctattaggtccgcgttatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaaatgctgctggtt |
21385866 |
T |
|
| Q |
101 |
atatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaattattggacttgc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21385865 |
atatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtactatgtttaatagtaaaattattggacttgc |
21385766 |
T |
|
| Q |
201 |
taatggtactgctgctggttggggtaatatgggtggtggggccactcagcttattatgcctttggtgtatgaattgattagaagagctggtgctactcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21385765 |
taatggtactgctgctggttggggtaatatgggtggtggggccactcagcttattatgcctttggtgtatgaattgattagaagagctggtgctactcct |
21385666 |
T |
|
| Q |
301 |
ttcactgcttggagaattgccttttttatccctggttggttgcatgttatcatgggtattatggtcttaacattaggccaagatttacctgatggtaacc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21385665 |
ttcactgcttggagaattgccttttttatccctggttggttgcatgttatcatgggtattatggtcttaacattaggccaagatttacctgatggtaacc |
21385566 |
T |
|
| Q |
401 |
ttg |
403 |
Q |
| |
|
||| |
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|
| T |
21385565 |
ttg |
21385563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 89 - 230
Target Start/End: Complemental strand, 48674302 - 48674164
Alignment:
| Q |
89 |
atgctgctggttatatagcagttaggtttatgattggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatagtaaaat |
188 |
Q |
| |
|
||||| |||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||| || || |
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| T |
48674302 |
atgcttctggatgtatagcagttaggttcatgattggtttctctttggcaacttttgtttcttaccaatattggatgagt---atgtttaataggaagat |
48674206 |
T |
|
| Q |
189 |
tattggacttgctaatggtactgctgctggttggggtaatat |
230 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
48674205 |
tattggacttgttaatgggactgctgctggttggggtaatat |
48674164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 36199810 - 36199965
Alignment:
| Q |
25 |
tatggttgtgcattccttataatgctaacagcaccaacagtgttttgtatgtcatttgttgaaa-atgctgctggttatatagcagttaggtttatgatt |
123 |
Q |
| |
|
||||||||||| || |||||||||||| | || ||||||| ||||||||| |||||| |||| ||||| |||| ||||||| ||||||||| |||||| |
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| T |
36199810 |
tatggttgtgctttacttataatgctatctgctccaacag-gttttgtatttcattt--tgaatgatgcttctggatatatagtagttaggttcatgatt |
36199906 |
T |
|
| Q |
124 |
ggtttctctttggcaacatttgtttcatgtcaatattggatgagtacaatgtttaatag |
182 |
Q |
| |
|
||||| ||||| ||||| |||||||| || |||||| ||| ||||| | ||||||||| |
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|
| T |
36199907 |
ggtttgtctttagcaacttttgtttcttgccaatatcggacgagtaagacgtttaatag |
36199965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 691479 - 691421
Alignment:
| Q |
172 |
atgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatat |
230 |
Q |
| |
|
||||||||| | || ||||||||||||| ||||| ||||||||||||||||||||||| |
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|
| T |
691479 |
atgtttaattggaagattattggacttgtcaatgggactgctgctggttggggtaatat |
691421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 693271 - 693213
Alignment:
| Q |
172 |
atgtttaatagtaaaattattggacttgctaatggtactgctgctggttggggtaatat |
230 |
Q |
| |
|
||||||||||| | ||| ||||||||| |||||| |||||||||||| |||||||||| |
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|
| T |
693271 |
atgtttaataggaggattgttggacttgttaatgggactgctgctggtcggggtaatat |
693213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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