View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20667_low_8 (Length: 305)
Name: NF20667_low_8
Description: NF20667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20667_low_8 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 30835796 - 30836093
Alignment:
| Q |
8 |
gaaaagaaaattaagagagaacataagagattcataaaagggaatggcggaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30835796 |
gaaaagaaaattaagagagaacataagagattcataaaagggaatggcagaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagaagt |
30835895 |
T |
|
| Q |
108 |
attttatttccttctcgagaacgatttgagattgaatttgaagaaaaatttgagaggattgaatattgaagatgatctctgcagaaaagaggaaacccca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30835896 |
attttatttccttctcgagaacgatttgagatcgaatttgaagaaaaacttgagaggattgaatattgaagatgatctctgcagaaaagaggaaacccca |
30835995 |
T |
|
| Q |
208 |
aattggaaaaccccattacagtgcaaaagagaaaacttgaaaatcttctcaaaataaagggaaggagagagataaagaaatggagcataagaagatcc |
305 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30835996 |
aattggaaaaccgcattacagtgcaaaagagaaaacttgaaaatcttctcagaataaagggcaggagagagataaagaaatggagcataagaagatcc |
30836093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 302
Target Start/End: Complemental strand, 18646422 - 18646391
Alignment:
| Q |
271 |
ggagagagataaagaaatggagcataagaaga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18646422 |
ggagagagataaagaaatggagcataagaaga |
18646391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 3192496 - 3192793
Alignment:
| Q |
8 |
gaaaagaaaattaagagagaacataagagattcataaaagggaatggcggaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3192496 |
gaaaagaaaattaagagagaacataagagattcataaaagggaatggcagaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagatga |
3192595 |
T |
|
| Q |
108 |
attttatttccttctcgagaacgatttgagattgaatttgaagaaaaatttgagaggattgaatattgaagatgatctctgcagaaaagaggaaacccca |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3192596 |
attttatttccttctcgagaatgatttgagatcgaatttgaagaaaaatttgagaggattggatattgaagatgatctctgcagaaaagaggaaatccca |
3192695 |
T |
|
| Q |
208 |
aattggaaaaccccattacagtgcaaaagagaaaacttgaaaatcttctcaaaataaagggaaggagagagataaagaaatggagcataagaagatcc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
3192696 |
aattggaaaaccccattacagtgcaaaagagaaaacttgaaaatcttctcaaaataaagggcatgagagagataaagaaatggagcataagaagatcc |
3192793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 302
Target Start/End: Complemental strand, 8023196 - 8023165
Alignment:
| Q |
271 |
ggagagagataaagaaatggagcataagaaga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8023196 |
ggagagagataaagaaatggagcataagaaga |
8023165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 1142495 - 1142200
Alignment:
| Q |
8 |
gaaaagaaaattaagagagaacataagagattcataaaagggaatggcggaagaaattgttcatggcgcgttatgcataaacgatttcagttgcagaagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||| |||||||||||||||||||||||||||||| || |
|
|
| T |
1142495 |
gaaaagaaaattaagagagaacataagagattcataaaagggaatggcagaagcaattgtccgtggtgcgttatgcataaacgatttcagttgcagatgt |
1142396 |
T |
|
| Q |
108 |
attttatttccttctcgagaacgatttgagattgaatttgaagaaaaatttgagaggattgaatattgaagatgatctctgcagaaaagaggaaacccca |
207 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |
|
|
| T |
1142395 |
attttgtttccttctcaagaacaatttgagatcgaatttaaagaaaaatttgagaggattgaatattgaagatggtctctgcaaaaaagaggaaacacca |
1142296 |
T |
|
| Q |
208 |
aattggaaaaccccattacagtgcaaaagagaaaacttgaaaatcttctcaaaataaagggaaggagagagataaagaaatggagcataagaagat |
303 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
1142295 |
aattggaaaactccattacagtgcaacagagaaaacttgaaaatcttctcaaaataaagggcatgagagagataaagaaatggagcataagaagat |
1142200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 302
Target Start/End: Complemental strand, 31982287 - 31982256
Alignment:
| Q |
271 |
ggagagagataaagaaatggagcataagaaga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31982287 |
ggagagagataaagaaatggagcataagaaga |
31982256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University