View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20668_high_1 (Length: 673)

Name: NF20668_high_1
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20668_high_1
NF20668_high_1
[»] chr4 (1 HSPs)
chr4 (19-664)||(35411591-35412236)
[»] scaffold0029 (1 HSPs)
scaffold0029 (30-120)||(53605-53695)


Alignment Details
Target: chr4 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 19 - 664
Target Start/End: Complemental strand, 35412236 - 35411591
Alignment:
Q  19 gttcaaaaaactatattatttctacggataatcaagtttaagatactcttatccaagtaatagtgaactgatagctaggaacatgcacatgagctactat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35412236 gttcaaaaaactatattatttctacggataatcaagtttaagatactcttatccgagtaatagtgaactgatagctaggaacatgcacatgagctactat 35412137  T
Q  119 tgatctataacagttttcttttccacctttacatgcaaacatggacaggttcgaaggctgagtcacgaccaagtaaatcagagttaatatacgtgccaag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35412136 tgatctataacagttttcttttccacctttacatgcaaacatggacagattcgaaggctgagtcacgaccaagtaaatcagagttaatatacgtgccaag 35412037  T
Q  219 ggatgaagaatttgaggacgttaagcgacaaaatattaatcaaggaaaattgatagcactgcttcgtaatcttgtacccgctttaacagataaaatcatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35412036 ggatgaagaatttgaggacgttaagcgacaaaatattaatcaaggaaaattgatagcactgcttcgtaatcttgtacccgctttaacggataaaatcatg 35411937  T
Q  319 ggcagtgaagatatttcaaacattgatagcttcattcaagagcctaaagggcgctctgaacctaagtcactgctcaatttaagagtggccatggaagaga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35411936 ggcagtgaagatatttcaaacattgatagcttcattcaagagcctaaagggcgctctgaacctaagtcactgctcaatttaagagtggccatggaagaga 35411837  T
Q  419 tttttaaatttgaacctccaaagatattttcaagtaaggcatgaattttgttggataacatcatgtggttttgatttagacaaacaaattattgaaatga 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35411836 tttttaaatttgaacctccaaagatattttcaagtaaggcatgaattttgttggataacatcatgtggttttgatttagacaaacaaattattgaaatga 35411737  T
Q  519 agtggaataattttcaggtgggggatcacatttcttacttgatgatgaatttggacgtcaagtgctagctgggataaaccctttaagtattgaaaggcta 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35411736 agtggaataattttcaggtgggggatcacatttcttacttgatgatgaatttggacgtcaagtgctagctgggataaaccctttaagtattgaaaggcta 35411637  T
Q  619 aaggtaatcataaaaatgaaacattttcattagtagtgagtattat 664  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35411636 aaggtaatcataaaaatgaaacattttcattagtagtgagtattat 35411591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 53605 - 53695
Alignment:
Q  30 tatattatttctacggataatcaagtttaagatactcttatccaagtaatagtgaactgatagctaggaacatgcacatgagctactattg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  53605 tatattatttctacggataatcaagtttaagatactcttatccgagtaatagtgaactgatagctaggaacgtgcacatgaactactattg 53695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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