View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20668_high_13 (Length: 253)

Name: NF20668_high_13
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20668_high_13
NF20668_high_13
[»] chr4 (6 HSPs)
chr4 (177-228)||(5194831-5194882)
chr4 (177-236)||(5181476-5181535)
chr4 (178-236)||(4843281-4843339)
chr4 (178-236)||(5159249-5159307)
chr4 (138-176)||(4843423-4843461)
chr4 (142-176)||(5172102-5172136)


Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
Q  177 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5194831 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc 5194882  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 5181476 - 5181535
Alignment:
Q  177 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcat 236  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||    
T  5181476 ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcat 5181535  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 4843339 - 4843281
Alignment:
Q  178 catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcat 236  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||    
T  4843339 cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcat 4843281  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 5159249 - 5159307
Alignment:
Q  178 catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcat 236  Q
    ||||| ||||||||||||||||  |||| ||||||||||||||||| |||||| |||||    
T  5159249 cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcat 5159307  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 4843461 - 4843423
Alignment:
Q  138 gaaaaaatatgttttgtcactctccacataatactcttt 176  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  4843461 gaaaaaatatggtttgccactctccacataatactcttt 4843423  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 5172102 - 5172136
Alignment:
Q  142 aaatatgttttgtcactctccacataatactcttt 176  Q
    |||||||||||| ||||||||||||||||||||||    
T  5172102 aaatatgttttgccactctccacataatactcttt 5172136  T

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