View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_high_14 (Length: 250)
Name: NF20668_high_14
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28927132 - 28926901
Alignment:
| Q |
1 |
tatgataaatactcatacaatgttccctggaaatttctggttgtttatttcaatgcttgcaatctggtctgtgacacaattgtaagtagtattgttttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
28927132 |
tatgataaatactcatacaatgttccctggaaatttctggttgtttatttcaatgcttgcgatctggtctgtgacacaattgtaagta---ttgttttat |
28927036 |
T |
|
| Q |
101 |
ttgatttcattcccatgtagtatcccttattggtttgattgaaggttgattctatatcgaactcctttgcattttttcccttacacctgttgttgaataa |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28927035 |
ttgatttcattcccatgta---tcccttattggtttgattggaggttgattctatatcgaactcatttgcattttttcccttacacctgttgttgaataa |
28926939 |
T |
|
| Q |
201 |
aacgttaagttcatgagttctggaatagtctttcgttc |
238 |
Q |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
28926938 |
aacgttaagttgatgagttctggaatagtctttcgttc |
28926901 |
T |
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