View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_high_19 (Length: 234)
Name: NF20668_high_19
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 56284261 - 56284041
Alignment:
| Q |
1 |
tacccccttcctccttgagttatgctctactataactttgtttgatgtattggaatgattggtttggtgaaaagcaaatcctatgatatgctttatcata |
100 |
Q |
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| T |
56284261 |
tacccccttcctccttgagttatgctctactataactttgtttgatgtattggaatgattggtttggtgaaaagcaaatcctatgatatgctttatcata |
56284162 |
T |
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| Q |
101 |
aataaatgctttttaatttttcttttgtaggcaggatcagttggcgttgtatgtcatgttggaaacaggacaactggaagtccaaatttatataaaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56284161 |
aataaatgctttttaatttttcttttgtaggcaggatcagttggcgttgtatgtcatgttggaaacaggacaactggaagtccaaatttatataaaaata |
56284062 |
T |
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| Q |
201 |
aaatcatatattgtataaatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
56284061 |
aaatcatatattgtataaatt |
56284041 |
T |
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