View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_high_20 (Length: 227)
Name: NF20668_high_20
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 41760112 - 41759896
Alignment:
| Q |
1 |
atgaatatttgtgtaaatttcataagatgggaatgagttttcatcccttgagtcagtgttgatatattttggaaatttagttgacacatattgtccatag |
100 |
Q |
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| T |
41760112 |
atgaatatttgtgtaaatttcataagatgggaatgagttttcatcccttgagtcagtgttgatatattttggaaatttagttgacacatattgtccatag |
41760013 |
T |
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| Q |
101 |
tgttcactctgtaaagaaagagaatgaaatgaggtttggtagattgtaagtagtgagatatgatggtttggtgaattaaagccaggaaggcctcattata |
200 |
Q |
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| T |
41760012 |
tgttcactc--taaagaaagagaatgaaatgaggtttggtagattgtaagtagtgagatatgatggtttggtgaattaaagccaggaaggcctcattata |
41759915 |
T |
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| Q |
201 |
tatagtggtgactggtgtg |
219 |
Q |
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| T |
41759914 |
tatagtggtgactggtgtg |
41759896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 41794964 - 41794854
Alignment:
| Q |
1 |
atgaatatttgtgtaaatttcataagatgggaatgagttttcatcccttgagtcagtgttgatatattttggaaatttagttgacacatattgtccatag |
100 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |
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| T |
41794964 |
atgaatatttgtgtaaatttcattagatttgaatgagttttcatcccttgagtcagtgttgatatattttggaattttaatcgacacatattgtccatag |
41794865 |
T |
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| Q |
101 |
tgttcactctg |
111 |
Q |
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| T |
41794864 |
tgtttactctg |
41794854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 41794831 - 41794762
Alignment:
| Q |
150 |
gtagtgagatatgatggtttggtgaattaaagccaggaaggcctcattatatatagtggtgactggtgtg |
219 |
Q |
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| T |
41794831 |
gtagtgagataggatggtttggtgaattaagggcatgaatgactcattatatatagtgctgattggtgtg |
41794762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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