View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_high_8 (Length: 423)
Name: NF20668_high_8
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 36705525 - 36705920
Alignment:
| Q |
13 |
tgagaataacctgtatagtgaattttttgacccgtattgttgtaaacatattgaactgaagctgggagatcataatttgctaattcatcccatgatcaat |
112 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |
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| T |
36705525 |
tgagaatgacctgtatagtgaatttttttacccgtattgttgtaaacatattgaactgaagcagggagatcataacttgctaattcatcccatgaccaat |
36705624 |
T |
|
| Q |
113 |
tccagtaagcctatacatataatgaaataaatcaataatgaactataattactattaaatagtgaaaattagaagagattgaaatattgcaaatgttatg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
36705625 |
tccagtaagcctatacatataatgaaataaatcaataatgaactataattactattaaatactgaaaattagaagagattgaaatattgcaaatgttctg |
36705724 |
T |
|
| Q |
213 |
tatattgtaaagtacacaaaccatttcattaggatttagtgatgtgtgcatggtgctatattttgtgccgtggccattcacaagtcacacatcaaatcca |
312 |
Q |
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| T |
36705725 |
tatattgtaaagtacacaaaccatttcattaggatttagtgatgtgtgcatggtgctatattttgtgccgcggccattgacaagccacacatcaaatcca |
36705824 |
T |
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| Q |
313 |
atgtttgctaaaataaatcctaatgattcttctggagaattgaacaaccatattgctgcatcctgaaatatatatcataggagtcaaattaataac |
408 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
36705825 |
atgtctgctaaaataaatcctaatgattcttctggagaattgaacaaccatattgctgcatcctgaaatatatatcataggggtcatattaataac |
36705920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 231 - 404
Target Start/End: Original strand, 36713259 - 36713430
Alignment:
| Q |
231 |
aaccatttcattaggatttagtgatgtgtgcatggtgctatattttgtgccgtggccattcacaagtcacacatcaaatccaatgtttgctaaaataaat |
330 |
Q |
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| T |
36713259 |
aaccatgtcattgggacttagtgatgtgtggttggtgctatattttgtgcctcgaccattgataagccacacatcaaatccaatatctgctaaaataaat |
36713358 |
T |
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| Q |
331 |
cctaatgattcttctggagaattgaacaaccatattgctgcatcctgaaatatatatcataggagtcaaattaa |
404 |
Q |
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|| ||||||||||||||||||||||||||||||| ||| || ||||||| ||| ||||||||||||||||||| |
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| T |
36713359 |
cccaatgattcttctggagaattgaacaaccatactgcagcgtcctgaa--ataaatcataggagtcaaattaa |
36713430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 231 - 366
Target Start/End: Complemental strand, 36663316 - 36663181
Alignment:
| Q |
231 |
aaccatttcattaggatttagtgatgtgtgcatggtgctatattttgtgccgtggccattcacaagtcacacatcaaatccaatgtttgctaaaataaat |
330 |
Q |
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|||||| |||| |||| |||| ||||| ||||||||||||||||||||||| | ||||| ||||| |||||||||| |||| ||| ||||| |||||| |
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| T |
36663316 |
aaccatgtcatcaggagttagcgatgtatgcatggtgctatattttgtgccacgaccattgacaagccacacatcaactccattgtcggctaagataaat |
36663217 |
T |
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| Q |
331 |
cctaatgattcttctggagaattgaacaaccatatt |
366 |
Q |
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| T |
36663216 |
cccaacgattcttctggtgaattgaacaaccatatt |
36663181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 36663547 - 36663431
Alignment:
| Q |
13 |
tgagaataacctgtatagtgaattttttgacccgtattgttgtaaacatattgaactgaagctgggagatcataatttgctaattcatcccatgatcaat |
112 |
Q |
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||||||| || || |||||| ||||||| ||| |||| ||||||||||||||| |||||||| || ||||||||||| || |||||||||||||| |||| |
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| T |
36663547 |
tgagaatgacttgcatagtggatttttttaccagtatggttgtaaacatattggactgaagcaggaagatcataattagccaattcatcccatgaccaat |
36663448 |
T |
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| Q |
113 |
tccagtaagcctataca |
129 |
Q |
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|||||||||||||||| |
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| T |
36663447 |
cccagtaagcctataca |
36663431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 36698943 - 36699020
Alignment:
| Q |
52 |
ttgtaaacatattgaactgaagctgggagatcataatttgctaattcatcccatgatcaattccagtaagcctataca |
129 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||| || |||||||||||||| |||| |||||||||||||||| |
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| T |
36698943 |
ttgtaaacatattggactgaagcatggagatcataattagccaattcatcccatgaccaatcccagtaagcctataca |
36699020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 36713084 - 36713179
Alignment:
| Q |
34 |
attttttgacccgtattgttgtaaacatattgaactgaagctgggagatcataatttgctaattcatcccatgatcaattccagtaagcctataca |
129 |
Q |
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||||||||||| |||| |||||| |||||||| ||||||| || ||||||||| ||||||||||||||||| |||| |||||||||||||||| |
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| T |
36713084 |
attttttgaccagtatggttgtacacatattgtgctgaagcaggtagatcataaccggctaattcatcccatgaccaatcccagtaagcctataca |
36713179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 250 - 381
Target Start/End: Complemental strand, 30904227 - 30904096
Alignment:
| Q |
250 |
agtgatgtgtgcatggtgctatattttgtgccgtggccattcacaagtcacacatcaaatccaatgtttgctaaaataaatcctaatgattcttctggag |
349 |
Q |
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||||| |||||| |||||||||||||||||||| | ||||| ||||| ||||||||||||||| | | |||||| ||||||||||||||||||||||||| |
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| T |
30904227 |
agtgaagtgtgcgtggtgctatattttgtgccgcgaccattgacaagccacacatcaaatccactatctgctaagataaatcctaatgattcttctggag |
30904128 |
T |
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| Q |
350 |
aattgaacaaccatattgctgcatcctgaaat |
381 |
Q |
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|||||||||||||||| |||||||||||| |
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| T |
30904127 |
tattgaacaaccatattatagcatcctgaaat |
30904096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 30904420 - 30904323
Alignment:
| Q |
28 |
tagtgaattttttgacccgtattgttgtaaacatattgaactgaagctgggagatcataatttgctaattcatcccatgatcaattccagtaagccta |
125 |
Q |
| |
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||||| ||||||||||| |||| |||||| ||||| || |||||||| || ||||||||||| || |||||||||||||| |||||||| |||||||| |
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| T |
30904420 |
tagtgcattttttgaccagtatggttgtacacatactggactgaagcaggaagatcataattagccaattcatcccatgaccaattccaataagccta |
30904323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 30910841 - 30910746
Alignment:
| Q |
29 |
agtgaattttttgacccgtattgttgtaaacatattgaactgaagctgggagatcataatttgctaattcatcccatgatcaattccagtaagcct |
124 |
Q |
| |
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|||| ||||||||||| |||| || |||||||||||| |||| ||| || ||||||| ||| |||||||| |||||||| || | ||||||||||| |
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| T |
30910841 |
agtgcattttttgaccagtatggtcgtaaacatattgcactgtagcaggaagatcattattagctaattcttcccatgaccactcccagtaagcct |
30910746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 11293644 - 11293545
Alignment:
| Q |
27 |
atagtgaattttttgacccgtattgttgtaaacatattgaactgaagctgggagatcataatttgctaattcatcccatgatcaattccagtaagcctat |
126 |
Q |
| |
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|||||| |||||||||| |||| | |||||||||||| | |||||| || ||||||| | ||||||||||||||||| |||| ||||||| ||||| |
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| T |
11293644 |
atagtgtattttttgactggtatgatcgtaaacatattgcattgaagcaggaagatcattgctagctaattcatcccatgaccaatcccagtaaccctat |
11293545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 11299567 - 11299494
Alignment:
| Q |
54 |
gtaaacatattgaactgaagctgggagatcataatttgctaattcatcccatgatcaattccagtaagcctata |
127 |
Q |
| |
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|||||||||||| | |||||| || ||||||| | ||||||||||||||||| |||| ||||||| |||||| |
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| T |
11299567 |
gtaaacatattgcattgaagcaggaagatcatttctagctaattcatcccatgaccaatcccagtaaccctata |
11299494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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