View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20668_low_11 (Length: 333)

Name: NF20668_low_11
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20668_low_11
NF20668_low_11
[»] chr3 (1 HSPs)
chr3 (49-191)||(48745315-48745457)
[»] chr1 (1 HSPs)
chr1 (123-191)||(8440035-8440103)
[»] chr4 (4 HSPs)
chr4 (118-189)||(13137275-13137346)
chr4 (123-185)||(26169066-26169128)
chr4 (118-191)||(42527185-42527258)
chr4 (120-187)||(8815548-8815616)
[»] chr8 (1 HSPs)
chr8 (119-191)||(43776414-43776487)
[»] chr5 (2 HSPs)
chr5 (138-191)||(24561309-24561361)
chr5 (138-189)||(24602344-24602394)
[»] chr2 (1 HSPs)
chr2 (149-191)||(38409216-38409258)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 48745315 - 48745457
Alignment:
Q  49 tgtttttggtggg-tttaggttgttgccttgtaaattctgtaaatattgctgatattccggattcgtttcttggtgtttcctccttcgcacatcttgtgc 147  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||| |||    
T  48745315 tgtttttggtggggtttaggttgtttccttgtaaattctgtaaatattgctgatactccagattcgtttcttggtgttt-ctccttcgcatatcttatgc 48745413  T
Q  148 caggagggccttttgtcatggtaatataattcattttagcctct 191  Q
    ||||| | |||||| || ||||||||||||||||||||| ||||    
T  48745414 caggaagaccttttatcgtggtaatataattcattttagtctct 48745457  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 8440103 - 8440035
Alignment:
Q  123 gtttcctccttcgcacatcttgtgccaggagggccttttgtcatggtaatataattcattttagcctct 191  Q
    |||||||||||||||||| |||||  ||||||  |||||||| ||||||||||||||||||||||||||    
T  8440103 gtttcctccttcgcacattttgtgttaggaggatcttttgtcgtggtaatataattcattttagcctct 8440035  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 13137275 - 13137346
Alignment:
Q  118 ttggtgtttcctccttcgcacatcttgtgccaggagggccttttgtcatggtaatataattcattttagcct 189  Q
    |||||||||| ||||  ||||||||||||| |||| | ||||||||  ||||||||||||||||||||||||    
T  13137275 ttggtgtttcttcctcggcacatcttgtgctaggaagaccttttgttgtggtaatataattcattttagcct 13137346  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 26169128 - 26169066
Alignment:
Q  123 gtttcctccttcgcacatcttgtgccaggagggccttttgtcatggtaatataattcatttta 185  Q
    ||||||||||||||||| ||||||| ||||||| |||||||| |||||||||| || ||||||    
T  26169128 gtttcctccttcgcacaacttgtgctaggagggtcttttgtcgtggtaatatattttatttta 26169066  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 42527258 - 42527185
Alignment:
Q  118 ttggtgtttcctccttcgcacatcttgtgccaggagggccttttgtcatggtaatataattcattttagcctct 191  Q
    |||||||||| |||||  |||| ||||||| |||| |||||||||   | ||||||||||||||||| ||||||    
T  42527258 ttggtgtttcttccttgacacaccttgtgctaggaaggccttttgatgtagtaatataattcatttttgcctct 42527185  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 8815548 - 8815616
Alignment:
Q  120 ggtgtttcctccttcgcacatcttgtgccaggagggcct-tttgtcatggtaatataattcattttagc 187  Q
    |||||||| ||||| ||||  ||||||| |||| ||||| ||||| ||||||||||| |||||||||||    
T  8815548 ggtgtttcttccttagcactccttgtgctaggaaggcctatttgttatggtaatatatttcattttagc 8815616  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 43776414 - 43776487
Alignment:
Q  119 tggtgtttcctccttcgcacatcttgtgccaggagggcc-ttttgtcatggtaatataattcattttagcctct 191  Q
    ||||||||| ||||| | ||| ||||||| |||| |||| ||||||  ||||||||||||||||||||||||||    
T  43776414 tggtgtttcttccttagtacaccttgtgctaggaaggccattttgttgtggtaatataattcattttagcctct 43776487  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 24561361 - 24561309
Alignment:
Q  138 catcttgtgccaggagggccttttgtcatggtaatataattcattttagcctct 191  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||| |||||||    
T  24561361 catcttgtgccaggagggtcttt-gtcgtggtaatataattcatttaagcctct 24561309  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 24602394 - 24602344
Alignment:
Q  138 catcttgtgccaggagggccttttgtcatggtaatataattcattttagcct 189  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||| |||||    
T  24602394 catcttgtgccaggagggtcttt-gtcgtggtaatataattcatttaagcct 24602344  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 38409216 - 38409258
Alignment:
Q  149 aggagggccttttgtcatggtaatataattcattttagcctct 191  Q
    |||| ||||||||||  ||||||||||||||||||||||||||    
T  38409216 aggaaggccttttgttgtggtaatataattcattttagcctct 38409258  T

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