View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_low_12 (Length: 290)
Name: NF20668_low_12
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 51044853 - 51045112
Alignment:
| Q |
11 |
cacagactataactaaacgtaagcagaggaaagcaaatacatacatcgcgataggtggttgtgttctttgcacgttcaccatggtaacgagaatcaaccg |
110 |
Q |
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| T |
51044853 |
cacagactataactaaacgtaagcagaggaaagcaaatacatacatcgcgataggtggttgcgttctttgcacgttcaccatggtaacgagaatcaaccg |
51044952 |
T |
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| Q |
111 |
aaattgttatatatcctcgcgaagcatatgcctgaaacacgaagaccaaaaatggaaaccaaagccccnnnnnnnttgacgattattataagctaatgaa |
210 |
Q |
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| T |
51044953 |
aaattgttatatatcctcgcgaagcatatgcctgaaacacgaagaccaaaaatggaaaccaaag--ccaaaaaaattgacgattattataagctaatgaa |
51045050 |
T |
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| Q |
211 |
tcatgataaatcatatttcataggactagaacaaaatgagtgatgattgaagctgagaaaat |
272 |
Q |
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| T |
51045051 |
tcatgataaatcatatttcataggagtagaacaaaatgagtgatgattgaagctgagaaaat |
51045112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 51036991 - 51037119
Alignment:
| Q |
46 |
aatacatacatcgcgataggtggttgtgttctttgcacgttcaccatggtaacgagaatcaaccgaaattgttatatatcctcgcgaagcatatgcctga |
145 |
Q |
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| T |
51036991 |
aatacatacatcacaataggtgtttatgtccttcgcacgttcaccatggtaacgagaatcaactgaaattgctatatatccccgcgaagcatatgcctga |
51037090 |
T |
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| Q |
146 |
aacacgaagaccaaaaatggaaaccaaag |
174 |
Q |
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| T |
51037091 |
aacaagaagcacaaaaatagaaaccaaag |
51037119 |
T |
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