View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_low_15 (Length: 248)
Name: NF20668_low_15
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_low_15 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 27490998 - 27491212
Alignment:
| Q |
32 |
agttatgaataatggttgtaatgtaattcttttgtgtaaagttatttatacatgaattttataataagtgcttgaaaagtagggaaattaatgtaaagga |
131 |
Q |
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| T |
27490998 |
agttatgaataatggttgtaatgtaattcttttgtgtaaagttatttatacataaattttataataagtgcttgaaaagtagggaaattaatgtaaagga |
27491097 |
T |
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| Q |
132 |
aatacataccacatgagaaaccatagtaaatgtttgctccttgtcgaacttcaaggaagttttgaaataaaaaattgatttagaatacaaatttgtgaag |
231 |
Q |
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| T |
27491098 |
aatacataccacatgagaaaccatagtaaatgtttgctccttgtcgaacttcaaggaagttttgaaataaaaaattg--gtagaatacaaatttgtgaag |
27491195 |
T |
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| Q |
232 |
ctgtggaggtcttgcct |
248 |
Q |
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| T |
27491196 |
atgtggagatcttgcct |
27491212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 27483704 - 27483920
Alignment:
| Q |
30 |
ttagttatgaataatggttgtaatgtaattcttttgtgtaaagttatttatacatgaattttataataagtgcttgaaaagtagggaaattaatgtaaag |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
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| T |
27483704 |
ttagttatgaataatggttgtaatgtaattcttttgtgtaaagttatttatacataaattttataataagtgcttgaaaagttggataattaatgtaaag |
27483803 |
T |
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| Q |
130 |
gaaatacataccacatgagaaaccatagtaaatgtttgctccttgtcgaacttcaaggaagttttgaaataaaaaattgatttagaatacaaatttgtga |
229 |
Q |
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| T |
27483804 |
gaaatacgtaccacatgagaaaccatagtaaaggtgtgctccttgtcaaacttcaaggaagttttgaaataaaaaattga--tagaatacaaatttgtga |
27483901 |
T |
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| Q |
230 |
agctgtggaggtcttgcct |
248 |
Q |
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| T |
27483902 |
agatgtggagatcttgcct |
27483920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 27490957 - 27491003
Alignment:
| Q |
30 |
ttagttatgaataatggttgtaatgtaattcttttgtgtaaagttat |
76 |
Q |
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| T |
27490957 |
ttagttatgaataatggttgtaatgtaattcttttgtgtaaagttat |
27491003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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