View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_low_17 (Length: 238)
Name: NF20668_low_17
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7497911 - 7498127
Alignment:
| Q |
1 |
ttacactgaaacacccaattcttaatagtcttcttgacatgtattctctccttagtatctacatatatcttgctcaatttcgcctcatgataattttctt |
100 |
Q |
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| T |
7497911 |
ttacactgaaacacccaattctcaatagtcttcttgacatgtattctctccttagtatcta----tatcttgctcaatttcgcctcatgataattttctt |
7498006 |
T |
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| Q |
101 |
cgactattctgtatgattgttgataaaattggttggaaaacttttatcgagttcagttagcatatgatattataatggcaacgtcatatacaattctaga |
200 |
Q |
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| T |
7498007 |
cgactattctgtatgattgttgataaaattggttggaaaacttttatcgagttcagttagcatatgatattataatggcaacttcatatacaattctaga |
7498106 |
T |
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| Q |
201 |
ataattgtgttcaagacattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7498107 |
ataattgtgttcaagacattt |
7498127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 37685783 - 37685634
Alignment:
| Q |
73 |
ctcaatttcgcctcatgataattttcttcgactattctgtatgattgttgataaaa-ttggttggaaaacttttatcgagttcagttagcatatgatatt |
171 |
Q |
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| T |
37685783 |
ctcaatttcgcctcatgataattttcttcgactattctgtatgattgttgataaaaattggttggaaaacttttatcgagttcagttagcatatgatatt |
37685684 |
T |
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| Q |
172 |
ataatggcaacgtcatatacaattctagaataattgtgttcaagacattt |
221 |
Q |
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| T |
37685683 |
ataatggcaacgtcatatacaattctagaataattgtgttcaagacattt |
37685634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37685822 - 37685784
Alignment:
| Q |
1 |
ttacactgaaacacccaattcttaatagtcttcttgaca |
39 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
37685822 |
ttacactgaaacacccaattcttaatagttttcttgaca |
37685784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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