View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20668_low_2 (Length: 616)

Name: NF20668_low_2
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20668_low_2
NF20668_low_2
[»] chr3 (10 HSPs)
chr3 (284-609)||(44788077-44788402)
chr3 (46-225)||(44789111-44789290)
chr3 (298-452)||(44786556-44786710)
chr3 (298-396)||(44791978-44792076)
chr3 (298-394)||(44799934-44800030)
chr3 (289-400)||(44783655-44783766)
chr3 (298-394)||(44803783-44803879)
chr3 (298-367)||(44796902-44796971)
chr3 (1-45)||(44788647-44788691)
chr3 (227-260)||(44789326-44789359)
[»] chr5 (2 HSPs)
chr5 (335-455)||(36681351-36681470)
chr5 (553-610)||(36681503-36681560)


Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 284 - 609
Target Start/End: Complemental strand, 44788402 - 44788077
Alignment:
Q  284 cagggaagggtatggctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaatatattccctttatcag 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  44788402 cagggaagggtatggctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaatatatttcctttatcac 44788303  T
Q  384 taaaatgtgaaactgagtacaaatgacagaagagcatatacgaaacttttgaggtagaaaactccctctattaggttttgtttctgtttttcattcatat 483  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44788302 taaaatgtgaaactgagaacaaatgacagaagagcatatacgaaacttttgaggtagaaaactccctctattaggttttgtttctgtttttcattcatat 44788203  T
Q  484 cattcttgcgagaaatattagagttgtactttcatcattgtttggttttctcagttccatatagatgagaacaaagccacgaataactgattttgagtaa 583  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44788202 cattcttgcgagaaatattagagttgtacttttatcattgtttggttttctcagttccatatagatgagaacaaagccacgaataactgattttgagtaa 44788103  T
Q  584 gcttacgatagtagggttgtgtattt 609  Q
    ||||||||||||||||||||||||||    
T  44788102 gcttacgatagtagggttgtgtattt 44788077  T

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Target: chr3; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 46 - 225
Target Start/End: Original strand, 44789111 - 44789290
Alignment:
Q  46 gagactcaagtacctaggacttgtcattgtcacacactatattggtcatcttttattgatataaatatgcattttagaagaacataagataaaaatagat 145  Q
    ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44789111 gagactcaaatatccaggacttgtcattgtcacacactatattggtcatcttttattgatataaatatgcattttagaagaacataagataaaaatagat 44789210  T
Q  146 agataaatacgaacgttgacataggcccgactcccacggaaatccagcggcgggaaatgcagctgcgcccatcacatcca 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  44789211 agataaatacgaacgttgacataggcccgactcccacggaaatccagcggcgggaattgcagctgcgcctatcacatcca 44789290  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 298 - 452
Target Start/End: Complemental strand, 44786710 - 44786556
Alignment:
Q  298 gctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaatatattccctttatcagtaaaatgtgaaact 397  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  44786710 gctgttataagcgtggagttaaggaagaaaaaaactggccaaatttttgctcaggggcgtcataccaaatatataccctttatcagtaaaatgtgaaact 44786611  T
Q  398 gagtacaaatgacagaagagcatatacgaaacttttgaggtagaaaactccctct 452  Q
    ||| | |||  | ||||||| |  || || |  ||||||||||||||||||||||    
T  44786610 gagaataaagtatagaagaggaattatgacatatttgaggtagaaaactccctct 44786556  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 44792076 - 44791978
Alignment:
Q  298 gctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaatatattccctttatcagtaaaatgtgaaac 396  Q
    |||||||||||||||||||||| ||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||| | |||||||||||||||    
T  44792076 gctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttgctcaagggcgtcataccaaatatattccctttgtaagtaaaatgtgaaac 44791978  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 44800030 - 44799934
Alignment:
Q  298 gctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaatatattccctttatcagtaaaatgtgaa 394  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||| |||||||| |||||||||||||||    
T  44800030 gctgttgtaagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatcttccctttgtcagtaaaatgtgaa 44799934  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 44783766 - 44783655
Alignment:
Q  289 aagggtatggctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaatatattccctttatcagtaaaa 388  Q
    |||| ||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| |||| || || |||  |||||||    
T  44783766 aaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttgctcatggacgtcataccacatatctttccattactagtaaaa 44783667  T
Q  389 tgtgaaactgag 400  Q
    ||||||||||||    
T  44783666 tgtgaaactgag 44783655  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 44803879 - 44803783
Alignment:
Q  298 gctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaatatattccctttatcagtaaaatgtgaa 394  Q
    |||||||||||||||||||| |||||||||||||| | |||| |||||||||| || |||| ||| |||||| |||||||||  |||||||||||||    
T  44803879 gctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttgctcaagggcgtcttacaaaatatcttccctttaggagtaaaatgtgaa 44803783  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 44796971 - 44796902
Alignment:
Q  298 gctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttgctcagggacgtcataccaaat 367  Q
    |||||| ||||||||||||| ||||||||||| ||||||||| |||||||||| || |||||||| ||||    
T  44796971 gctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttgctcaagggcgtcatacaaaat 44796902  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44788647 - 44788691
Alignment:
Q  1 ctagttactttcagttatgttattgaatgattctgttagcttagt 45  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  44788647 ctagttactttcagttatgttagtgaatgattctgttagcttagt 44788691  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 44789326 - 44789359
Alignment:
Q  227 cttacctgaattctgcaaattaatcaattaattt 260  Q
    ||||||||||||||||||||||||||||||||||    
T  44789326 cttacctgaattctgcaaattaatcaattaattt 44789359  T

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Target: chr5 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 335 - 455
Target Start/End: Original strand, 36681351 - 36681470
Alignment:
Q  335 gccaaatttttgctcagggacgtcataccaaatatattccctttatcagtaaaatgtgaaactgagtacaaatgacagaagagcatatacgaaacttttg 434  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||    
T  36681351 gccaaatttttgctcgggggcgtcataccaaatatattccctttatcagtaaaatgtgaaactgagaacaaaggacagaagaggatatacgaaa-ttttg 36681449  T
Q  435 aggtagaaaactccctctatt 455  Q
    |||||||||||||||||||||    
T  36681450 aggtagaaaactccctctatt 36681470  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 553 - 610
Target Start/End: Original strand, 36681503 - 36681560
Alignment:
Q  553 aacaaagccacgaataactgattttgagtaagcttacgatagtagggttgtgtatttg 610  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  36681503 aacaaagccacgaataactgattttgagtaaccttacaatagtagggttgtgtatttg 36681560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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