View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_low_23 (Length: 223)
Name: NF20668_low_23
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 28540522 - 28540691
Alignment:
| Q |
40 |
aaatcaaaattctgtcatttgaaaaaagaaaatcttgcatgttatttatatagcttctgatttttccataatttattggagaccctacttgttgaaatgt |
139 |
Q |
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| T |
28540522 |
aaatcaaaattctgtcatttgaaaaaagaaaatcttgcatgttatatatatagcttctgatttttccataatttattggagaccctacttgttgaaatgt |
28540621 |
T |
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| Q |
140 |
caagttctttacatcccttctaaacgagggctccattcttggcaataaatgcattacttttatgtgaact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28540622 |
caagttctttacatcccttctaaacgagggctccattcttggcaataaatgcattacttttatgtgaact |
28540691 |
T |
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