View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20668_low_3 (Length: 505)
Name: NF20668_low_3
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 27 - 404
Target Start/End: Complemental strand, 33583277 - 33582896
Alignment:
| Q |
27 |
gattacaaatcctggataacagaactcttagtggaaaactggacaaatgaagataatgaattacatattttagatcgagattgaaatctgaggaatataa |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
33583277 |
gattacaaatcctggataacagaactcttagtggaaaactggacaaagcaagataatgatttacatattttagatcgagtttgaaatttgaggaatataa |
33583178 |
T |
|
| Q |
127 |
aaattggtgatcgaaataaatatggggaaaaatgaacattactagcatggtggactaaaatagaaaaaccatttggaaggttagcatttataggtttaat |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33583177 |
aaattggtgatcgaaataaatatgggaaaaaatgaacattactagcatgatggactaaaatagaaaaaccatttggaaggttagcatttataggtttaat |
33583078 |
T |
|
| Q |
227 |
cttgtaaaatgatgtaaaacaattnnnnnnnttacaattgtgatcatagcttatgtatgaatcttttagagaataatcagatgaagaatgaataaaacaa |
326 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33583077 |
cttgtaaaatgaagtaaaacaattaaaagaattacaattgtgatcatagcttatatatcaatcttttagagaataatcagatgaagaatgaataaaacaa |
33582978 |
T |
|
| Q |
327 |
gaaataaaactatgtatacctgtctgagaagcatca----ataggtgaatgacctaaagaagagacggtgcttatatgatta |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33582977 |
gaaataaaactatgtatacctgtctgagaagcatcaatatataggtgaatgacctaaagaagagacggtgcttatatgatta |
33582896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 25122913 - 25122857
Alignment:
| Q |
322 |
aacaagaaataaaactatgtatacctgtctgagaagcatcaataggtgaatgaccta |
378 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
25122913 |
aacaagaaataacactatatatacctatctgagaagcatcactaggtgaatgaccta |
25122857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 25123063 - 25122987
Alignment:
| Q |
170 |
agcatggtggactaaaatagaaaaaccatttggaaggttagcatttataggtttaatcttgtaaaatgatgtaaaac |
246 |
Q |
| |
|
|||||| || ||||||| |||| ||||||||||||| ||| ||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
25123063 |
agcatgttgaactaaaacagaagaaccatttggaagattaacatgtataagtttaatcttgtaaaatgaagtaaaac |
25122987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 18475495 - 18475429
Alignment:
| Q |
180 |
actaaaatagaaaaaccatttggaaggttagcatttataggtttaatcttgtaaaatgatgtaaaac |
246 |
Q |
| |
|
||||||| ||| ||| ||||||||| ||| |||| ||||||||||| || |||||||||||||||| |
|
|
| T |
18475495 |
actaaaacagatgaacaatttggaagattaacattgataggtttaattttataaaatgatgtaaaac |
18475429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University