View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20668_low_4 (Length: 474)
Name: NF20668_low_4
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 121 - 458
Target Start/End: Original strand, 7109577 - 7109919
Alignment:
| Q |
121 |
agccattgttgattgcaaatggctctatcgagtcatttatattatatgtattaaacatttccaccccttctattcgaccatgtgtaaaaagagcctctag |
220 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
7109577 |
agccattgttgattgcaaatggctctgtcaagtcacttatattatatgtattaaacatttccaccccttctattcgaccatgtgtaaaaagagcctttgg |
7109676 |
T |
|
| Q |
221 |
taggaagatggataagttgattagcctccttccaatcaacaaaatca-----aggatcatccatatttggttcaaagcaaccacacatgtaagagagaca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7109677 |
taggaagatggataagttgattagcctccttccaatcaacaaaatcaaccataggatcatccatatttggttcaaagcaaccacacatgtaagagagaca |
7109776 |
T |
|
| Q |
316 |
tcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctccannnnnnnaaatttaaagcctaactttaaa |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
7109777 |
tcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcgtttataaactgttcaatctccatttttttaaatctaaagcctaactttaaa |
7109876 |
T |
|
| Q |
416 |
tttgttcctttttgaggggtttttggcctaatcccctccctcc |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7109877 |
tttgttcctttttgaggggtttttggcctaatcccctccctcc |
7109919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 7109167 - 7109285
Alignment:
| Q |
1 |
aggtatgggaataataacattggcattgtagttagggagcatccagtcatctacaaagaaatttaaaaccgcattagttacatcattattcacattgttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7109167 |
aggtatgggaataataacattggcattgtagttagggagcatccaatcatctacaaagaaatttaaaaccgcattagttacatcagtattcacattgttc |
7109266 |
T |
|
| Q |
101 |
caataagtttggaagaaat |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7109267 |
caataagtttggaagaaat |
7109285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 386
Target Start/End: Complemental strand, 7110878 - 7110772
Alignment:
| Q |
280 |
atttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcg |
379 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||| |||| | |
|
|
| T |
7110878 |
atttggttcgaagcaaccacacatgtaagagaaacatcacaatttaactcaaaatcttaatgtaatctatttataagtcgcctcgtttataaattgtttg |
7110779 |
T |
|
| Q |
380 |
atctcca |
386 |
Q |
| |
|
| ||||| |
|
|
| T |
7110778 |
acctcca |
7110772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 268 - 378
Target Start/End: Original strand, 9987640 - 9987749
Alignment:
| Q |
268 |
aggatcatccatatttggttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcattt |
367 |
Q |
| |
|
|||||| |||| ||||| |||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
9987640 |
aggatcgtccacatttgcttcaaagcaatcacacatgtaagagagacatcac-agttaacccaaaaccttaatgtaatgtgtttataactcgtcttgttt |
9987738 |
T |
|
| Q |
368 |
ataaactgttc |
378 |
Q |
| |
|
||||| ||||| |
|
|
| T |
9987739 |
ataaattgttc |
9987749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 9986483 - 9986561
Alignment:
| Q |
308 |
gagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcgatctcca |
386 |
Q |
| |
|
||||||||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||| |||| || ||||| |
|
|
| T |
9986483 |
gagagacatcataatttatcccaaaactttaatgtaatgtgtttataagtcgcatcatttataaattgtttgacctcca |
9986561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 9992710 - 9992790
Alignment:
| Q |
298 |
acacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttcga |
380 |
Q |
| |
|
|||||||||| |||||||||| | || |||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
9992710 |
acacatgtaaaagagacatcatagtt-aacttaaa-ccttaatgtaatgtgtttataagtcgtcttgtttataaattgttcga |
9992790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 369
Target Start/End: Original strand, 9991728 - 9991811
Alignment:
| Q |
286 |
ttcaaagcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttat |
369 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||||||||| |||||| |||||||||| || ||| || ||||||| ||||| |
|
|
| T |
9991728 |
ttcaaagcaaccacaccactaagggatacatcacaatttaacccaaaactttaatgtaatatgcttagaaatcgtctcgtttat |
9991811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 26169962 - 26169914
Alignment:
| Q |
403 |
gcctaactttaaatttgttcctttttgaggggtttttggcctaatcccc |
451 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26169962 |
gcctaacttcagatttgttcctttttgagggggttttggcctaatcccc |
26169914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 378
Target Start/End: Original strand, 29873561 - 29873648
Alignment:
| Q |
291 |
agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc |
378 |
Q |
| |
|
|||||||||||| || |||||||| ||||| | | |||||||||||||| | |||| |||||| |||| || || ||||||| ||||| |
|
|
| T |
29873561 |
agcaaccacacaagtgagagagacgtcacactcttactcaaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttc |
29873648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 378
Target Start/End: Original strand, 15841390 - 15841477
Alignment:
| Q |
291 |
agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaatgtaatgtgtttataagtcgtctcatttataaactgttc |
378 |
Q |
| |
|
|||||||||||| || |||||||||||||| | | || ||||||||||| | ||||||||||| | || ||||| ||| ||| ||||| |
|
|
| T |
15841390 |
agcaaccacacaagtgagagagacatcacactcttacccaaaaccttaaggcaatgtgtttatgaatcctctcacttacaaagtgttc |
15841477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 16524499 - 16524451
Alignment:
| Q |
291 |
agcaaccacacatgtaagagagacatcacaatttaactcaaaaccttaa |
339 |
Q |
| |
|
|||||||||||| |||||||||||| |||| | | |||||||||||||| |
|
|
| T |
16524499 |
agcaaccacacaagtaagagagacaccacactcttactcaaaaccttaa |
16524451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University