View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_low_5 (Length: 469)
Name: NF20668_low_5
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 10829768 - 10829324
Alignment:
| Q |
17 |
aaattaacattacacatgttaaatcgcagaattcaaaacaataaaataaacaagaaaatgattcataaatcatgttcaacaaatacgaaatcacacacta |
116 |
Q |
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| T |
10829768 |
aaattaacattacacatgttaaatcgcagaattcaaaacaagaaaataaacaagaaaatgattcataaatcatgttcaacaaatacgaaatcacacacta |
10829669 |
T |
|
| Q |
117 |
ttatcatatcatataaccaaattatgaattaaatcatggaaaaaatcaatacctggatcaatgtagcactgcgattaggctgaagaaacggattcagatc |
216 |
Q |
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| T |
10829668 |
ttatcatatcatataaccaaattatgaattaaatcatggaaaaaatcaatacctggatcaatgtagcactgcgattaggctgaagaaacggattccgatc |
10829569 |
T |
|
| Q |
217 |
gatgccgaatcttcgaatcagaatgcgatactcgacggattagctacgagaacagtaaaacgaaacttcgattagcaatggtgaatcgcgtgcggaatga |
316 |
Q |
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| T |
10829568 |
gatgccgaatcttcgaatcagaatgcaatactcgacggattagctacgagaacagtaaaacgaaacttcgattagcaatggtgaatcgcgtgcggaatga |
10829469 |
T |
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| Q |
317 |
aatcggaatctgataaattcccttaccctcgtttcttgttgatgaatgaagaaatgaatgagagtgtagtgtgatgagtaatgacggttacaaatagaat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10829468 |
aatcggaatctgataaattcccttaccctcgtttcttgttgatgaatgaagaaatgaatgagagtgtagtgtgatgagtaatgacggttacaaatagaac |
10829369 |
T |
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| Q |
417 |
cgtcctacttatactagcaaccaacaacaggtttttattcttttc |
461 |
Q |
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| T |
10829368 |
cgtcctacttatactagcaaccaacaacaggtttttattcttttc |
10829324 |
T |
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