View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_low_6 (Length: 466)
Name: NF20668_low_6
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 8259363 - 8259254
Alignment:
| Q |
55 |
ttgatcctgagtttccttggcgatcgtttcatattttgctagttgtacctctaaatcgatagcgaacaccacattcattgatccaattccaagtaatgac |
154 |
Q |
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| T |
8259363 |
ttgatcctgagtt-ctttggcgatcgtttcatattttgctagttgtacctctaaatcaatagcgaacaccacattcattgatccaattccaagtaatgac |
8259265 |
T |
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| Q |
155 |
cttctaaattt |
165 |
Q |
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| T |
8259264 |
cttctaaattt |
8259254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 292 - 450
Target Start/End: Complemental strand, 8258884 - 8258726
Alignment:
| Q |
292 |
aagaagacttaagtccagagacttgagtcattactctacaagagagtatcaaaggcagaaaagaaagacttcgttaannnnnnncatacccatcatagtt |
391 |
Q |
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| T |
8258884 |
aagaacacttaagtccaaagacttgagtcattactctacaagagagtattaaagacagaaaagaaagacttcattcattttcttcatacccatcatagtt |
8258785 |
T |
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| Q |
392 |
tatctatttatgcacaattcaagctttcttgattttaggattactagcaacatcttcat |
450 |
Q |
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| T |
8258784 |
tatctatttatccataattcaagcttcattgattttaggattactagcaacgtcttcat |
8258726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 8259231 - 8259145
Alignment:
| Q |
163 |
tttcgaaatctgagaacatgaaaaataaataattgtaaattgaatattaactcaaaggtaaaattgatagatgataactcaattata |
249 |
Q |
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| T |
8259231 |
tttccaaatctgagaacataaaaaataaataattgcaaattgaatattaactcaaaggtaaaattgatagatgataactcaactata |
8259145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 437
Target Start/End: Original strand, 32471261 - 32471304
Alignment:
| Q |
394 |
tctatttatgcacaattcaagctttcttgattttaggattacta |
437 |
Q |
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| T |
32471261 |
tctatttatgcacaatccaagcttccttgattttaggatcacta |
32471304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 39721119 - 39721169
Alignment:
| Q |
191 |
ataattgtaaattgaatattaactcaaaggtaaaattgatagatgataact |
241 |
Q |
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| T |
39721119 |
ataatcgtaaattgattattaattcaaaggtaaaattgagagatgagaact |
39721169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 4625471 - 4625435
Alignment:
| Q |
310 |
agacttgagtcattactctacaagagagtatcaaagg |
346 |
Q |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
4625471 |
agacttaagacattactctacaagagagtatcaaagg |
4625435 |
T |
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