View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20668_low_9 (Length: 387)
Name: NF20668_low_9
Description: NF20668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20668_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 116 - 316
Target Start/End: Complemental strand, 14499947 - 14499747
Alignment:
| Q |
116 |
gagctattacgaccatcaagagataattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaatatttatattttgacat |
215 |
Q |
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| T |
14499947 |
gagctattacgaccatcaagagataattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaatatttatattttgacat |
14499848 |
T |
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| Q |
216 |
acaaacaaataaataatatgggtgaaattatcaaggttgtttttgctatgattatttatctttacatgctcaccatcgtaaccaacggtaagtttattat |
315 |
Q |
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| T |
14499847 |
acaaacaaataaataatatgggtgatattatcaaggttgtttttgctatgattatttatctttacatgctcaccatcgtaaccaacggtaagtttattat |
14499748 |
T |
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| Q |
316 |
t |
316 |
Q |
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| |
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| T |
14499747 |
t |
14499747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 313
Target Start/End: Original strand, 15040146 - 15040335
Alignment:
| Q |
124 |
acgaccatcaagagataattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaatatttatattttgacatacaaacaa |
223 |
Q |
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| T |
15040146 |
acgaccatcaaaagacaattaataataattataatttaaagaatgaggctttttccactataaagtgatcatgcctatttatatttctacatacaaacaa |
15040245 |
T |
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| Q |
224 |
ataaataatatgggtgaaattatcaaggttgtttttgctatgattatttatctttacatgctcaccatcgtaaccaacggtaagtttatt |
313 |
Q |
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| T |
15040246 |
gtaaataatatggatgaaattatcaagtttctttttgttatggttatttatcttttaatgttcaccattgtaatcgacggtaagtttatt |
15040335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 14500062 - 14499994
Alignment:
| Q |
1 |
tcaaaattatcacaacacgtataattgcttacaataatcagggtgtgtgtcttgtctatcatgaaaggg |
69 |
Q |
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| T |
14500062 |
tcaaaattatcacaacacgtataattgcttacaataatcagggtgcgtgtcttgtctatcatgaaaggg |
14499994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 283
Target Start/End: Complemental strand, 14350590 - 14350444
Alignment:
| Q |
140 |
aattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaatatttatattttgacatacaaacaaata---aataatatgg |
236 |
Q |
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| T |
14350590 |
aattaataaaaattatatttggaagaatgaggttgttcacactataaagtgatcatgaaaaattatagttatacatacaaataagtaaacaacaaaatgg |
14350491 |
T |
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| Q |
237 |
gtgaaattatcaaggttgtttttgctatgattatttatctttacatg |
283 |
Q |
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| T |
14350490 |
gtgaaataatgaagtttgtttatgtaatgattatttatcttttcatg |
14350444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 5153308 - 5153409
Alignment:
| Q |
212 |
acatacaaacaaataaataatatgggtgaaattatcaaggttgtttttgctatgattatttatctttacatgctcaccatcgtaaccaacggtaagttta |
311 |
Q |
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|||| |||| || |||| |||||||||||||||| ||| |||||| || ||||||||||||||||| |||| ||||||| | ||||| | ||||||||| |
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| T |
5153308 |
acatccaaataagtaaacaatatgggtgaaattacaaagtttgtttatgttatgattatttatcttttcatgttcaccatggcaaccagcagtaagttta |
5153407 |
T |
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| Q |
312 |
tt |
313 |
Q |
| |
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|| |
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|
| T |
5153408 |
tt |
5153409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 272
Target Start/End: Complemental strand, 14425578 - 14425443
Alignment:
| Q |
140 |
aattaataataattataattggaagattgaagtttttcacactataaagtgatcatgaatatttatattttgacatacaaacaaata---aataatatgg |
236 |
Q |
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||||||||||||||||| |||||||| ||| ||| |||| |||||||||||||||| | ||||||||| ||| |||| || || || |||||| |
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| T |
14425578 |
aattaataataattatatttggaagaatgaggttgttcatgctataaagtgatcatgcaagtttatatttctacaatcaaataagtaaacaacaatatga |
14425479 |
T |
|
| Q |
237 |
gtgaaattatcaaggttgtttttgctatgattattt |
272 |
Q |
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| T |
14425478 |
gtgaaattatcaagtttgtttatgctatgtttattt |
14425443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 14499726 - 14499693
Alignment:
| Q |
336 |
ctcttaatttgatactcaacgtttcatcgcatgt |
369 |
Q |
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| T |
14499726 |
ctcttaatttgatactcaacgtttcatcgcatgt |
14499693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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