View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20669_high_1 (Length: 417)
Name: NF20669_high_1
Description: NF20669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20669_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 417
Target Start/End: Complemental strand, 10595816 - 10595413
Alignment:
| Q |
14 |
agaatgaaggacaacctccagagtagtacattggtgatggagagggaacatgaggaggataagaaggtatgtgactattgtaacaagggtaattattgtg |
113 |
Q |
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| T |
10595816 |
agaatgaaggacaacctccagagtagtacattggtgatggagagggaacatgaggaggataagaaggtatgtgactattgtaacaagggtaattattgtg |
10595717 |
T |
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| Q |
114 |
accatggcagaaatgtggtggtatagggtggttataattgctagcataaggccaaggttgttcataagggaagggtgatttggtcatttgaggaggaaca |
213 |
Q |
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| T |
10595716 |
gccatagcagaaatgtggtggtatagggtggttataattgctagcataaggccaaggttgttcataagggaagggtgatttggtcatttgaggaggaaca |
10595617 |
T |
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| Q |
214 |
agttcaatgccaggatgatggtaatgagggaatggtatttggtttctttgaaatgggtatgagtccatgtttctgtatccaggaatcatgtttgtttgga |
313 |
Q |
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| T |
10595616 |
ggttccatgcttggatggtgataataagggaatggtatttggtttctttgaaatgggtatgagtccatgtttctgtatccaggaatcatgtttgtttgga |
10595517 |
T |
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| Q |
314 |
aaggttaccaagaacagacagaactagattttcactggctgatcttggaaagttattatagcacaaactctgcagccnnnnnnntgcaccattaataaca |
413 |
Q |
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| T |
10595516 |
aaggttaccaagaacagacagaactagattttcactggctgatcttggaaagttattatagcacaaactctgcatccaaaaaaatgcaccattaataaca |
10595417 |
T |
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| Q |
414 |
agat |
417 |
Q |
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| T |
10595416 |
agat |
10595413 |
T |
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