View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20669_high_3 (Length: 308)
Name: NF20669_high_3
Description: NF20669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20669_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 5476511 - 5476784
Alignment:
| Q |
20 |
agaaaatggaaccttgattaattcttccaatggaatttacatgcttaaagaagtttatgcactaattttcaatgtagactcaatagaagatttattgatg |
119 |
Q |
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| T |
5476511 |
agaaaatggaaccttgattaattcttccaatggaatttacatgcttaaagaagtttatgcactaattttcaatgtagactcaatagaagatttattgatg |
5476610 |
T |
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| Q |
120 |
tgtaacgttatttgaaacagaattagtaccatcaatgatattgttatttgcattgcgattgttaaactatggactaaaataatttgcttcgtcatgagat |
219 |
Q |
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| T |
5476611 |
tgtaacgttatttgaaacaaaattagtaccatcaatgatattgttatttgcattgcgattgttaaactacggactaaaataatttgcttcgtcatgagat |
5476710 |
T |
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| Q |
220 |
tgataatatagaatctgtgaat-ggacttaatatgaatgaaacctcttgacatttgttttttgatttggaaaat |
292 |
Q |
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| T |
5476711 |
ttataatatagaatctgtgaatgggacttaatatgaatgaaacctcttgacatttgttttttgatttggaaaat |
5476784 |
T |
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