View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20669_high_4 (Length: 223)
Name: NF20669_high_4
Description: NF20669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20669_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23871345 - 23871124
Alignment:
| Q |
1 |
aatatagcattgatagtatttcattatgtttgtgtactaaacactaattcagtgtcattgcatgtaaaagaaccagtcttggttctacatgtggttaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23871345 |
aatatagcattgatagtatttcattatgtttgtgtactaaacactatctcagtgtcattgcatgtaaaagaaccagtcttggttctacatgtggttaatt |
23871246 |
T |
|
| Q |
101 |
tatttatcaaaacaattttgtgttgatgagttaatggttgaaaagtttaacagttaaacttaagttggttctgacactaacattttttgatgtaatgctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23871245 |
tatttatcaaaacaattttgtgttgatgagttaatgcttgaaaagtttaacagttaaacttaagttggttctgacactaacattttttgatgttatgctg |
23871146 |
T |
|
| Q |
201 |
caggatcccaaatcagatacca |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
23871145 |
caggatcccaaatcagatacca |
23871124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 23440650 - 23440861
Alignment:
| Q |
11 |
tgatagtatttcattatgtttgtgtactaaacactaattcagtgtcatt-gcatgtaaaagaaccagtcttggttctacatgtggttaatttatttatca |
109 |
Q |
| |
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|||||||||| |||| ||||||| | ||||||||||| || ||||||| ||||||||| |||||||| || ||| ||||||||| |||||| | || |
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| T |
23440650 |
tgatagtattccattttgtttgtctgctaaacactaactc--tgtcatttgcatgtaaatgaaccagtaatgattccacatgtggtacatttatatgcca |
23440747 |
T |
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| Q |
110 |
aaacaattttgtgttgatgagttaatggttgaaaagtttaacagttaaacttaagttggttctgacactaacattttttgatgtaatgctgcagg-atcc |
208 |
Q |
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|| ||||||| |||||||| ||||||| |||||||||||||| |||||| ||||||||||| |||||| |||||||| |||||| |||| |||| |||| |
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| T |
23440748 |
aatcaattttttgttgatgtgttaatgcttgaaaagtttaacggttaaatttaagttggttttgacaccaacattttgtgatgtcatgcaccaggaatcc |
23440847 |
T |
|
| Q |
209 |
caaatcagatacca |
222 |
Q |
| |
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||||||||| |||| |
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| T |
23440848 |
caaatcagaaacca |
23440861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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