View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20669_high_5 (Length: 211)

Name: NF20669_high_5
Description: NF20669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20669_high_5
NF20669_high_5
[»] chr3 (6 HSPs)
chr3 (1-55)||(6164373-6164427)
chr3 (1-55)||(13282988-13283042)
chr3 (85-174)||(6138377-6138466)
chr3 (85-174)||(13283948-13284037)
chr3 (9-55)||(6139058-6139104)
chr3 (54-89)||(13283261-13283296)


Alignment Details
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 6164427 - 6164373
Alignment:
Q  1 ttcacttcataaatcttgaaatctattgcctaataatgaaacaactcaagatata 55  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  6164427 ttcacttcataaatcttgaaatcaatggcctaataatgaaacaactcaagatata 6164373  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13282988 - 13283042
Alignment:
Q  1 ttcacttcataaatcttgaaatctattgcctaataatgaaacaactcaagatata 55  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  13282988 ttcacttcataaatcttgaaatctatggcctaataataaaacaactcaagatata 13283042  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 6138466 - 6138377
Alignment:
Q  85 aagtttcgataaaataatttgcatttgagatcacttttctaatttttctgatggagtatgcaatgtaacgatatccatgtaagagtattt 174  Q
    ||||||| ||||||||||||| ||||| ||||||| || |||||||||||||||| ||||||||||||    ||||| ||||||||||||    
T  6138466 aagtttcaataaaataatttgtatttgtgatcactattttaatttttctgatggactatgcaatgtaatatcatccacgtaagagtattt 6138377  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 13283948 - 13284037
Alignment:
Q  85 aagtttcgataaaataatttgcatttgagatcacttttctaatttttctgatggagtatgcaatgtaacgatatccatgtaagagtattt 174  Q
    ||||||| ||||||||||||| ||||| ||||||| || |||||||||||||||| ||||||||||||    ||||| ||||||||||||    
T  13283948 aagtttcaataaaataatttgtatttgtgatcactattttaatttttctgatggactatgcaatgtaatatcatccacgtaagagtattt 13284037  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 6139104 - 6139058
Alignment:
Q  9 ataaatcttgaaatctattgcctaataatgaaacaactcaagatata 55  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  6139104 ataaatcttgaaatctatggcctaataatgaaacaactcaagatata 6139058  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 13283261 - 13283296
Alignment:
Q  54 taactttggattaatctgtaaaggaaaatgcaagtt 89  Q
    |||||||||||||||||| |||||||||||||||||    
T  13283261 taactttggattaatctgcaaaggaaaatgcaagtt 13283296  T

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