View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20669_low_2 (Length: 389)
Name: NF20669_low_2
Description: NF20669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20669_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 33557474 - 33557838
Alignment:
| Q |
20 |
ctttcatccctcaaaatacagccgaaacggaaagaaacaccaatagtcacgtaaaggattaagcttttacaatatgtaagaaaagaatatctcctttttt |
119 |
Q |
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| T |
33557474 |
ctttcatccctcaaaatacagccgaaacggaaagaaacaccaatagtcacgtaaaggattaagcttttacaatatgtaagaaaagaatatctcctttttt |
33557573 |
T |
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| Q |
120 |
gggacaaaacttatgtaagaaatgatccgtggtagatggtgtttaaaattattagaaatttttgcggcaaagagagtgacataatt-atgtcggtttaat |
218 |
Q |
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| T |
33557574 |
gggacaaaacttatgtaagaaatgatccgtggtagatggtatttaaaattattagaaatttttacggcaaagagagtgacataattgatgtcggtttaat |
33557673 |
T |
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| Q |
219 |
acgagttacatacttatttgttgttgtttatattg----aattaatatcaattaagttattatctcaattgtaaaaattaagaggatcgctaacctctac |
314 |
Q |
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| T |
33557674 |
acgagttacatatttatttgttgttgtttttattgaattaattaatatcaattaagttattatctcaattgtaaaaattaagaggatcgctaacctctac |
33557773 |
T |
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| Q |
315 |
tattaagaaatgacttgtgccatatttgaaattttaaacattttttaagtgttgatccacctatg |
379 |
Q |
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| T |
33557774 |
tattaagaaatgacttgtgccatatttgaaattttaaacattttttaagtgttgatccacctatg |
33557838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 476774 - 476707
Alignment:
| Q |
253 |
gaattaatatcaattaagttattatctcaattgtaaaaattaagaggatcgctaacctctactattaa |
320 |
Q |
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| T |
476774 |
gaattgatatcaattgagtcattatctcaattgtaaaaatgacaaggatcattaacctccactattaa |
476707 |
T |
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