View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20669_low_5 (Length: 282)
Name: NF20669_low_5
Description: NF20669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20669_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 40683860 - 40683608
Alignment:
| Q |
11 |
catcatcacatccacgtaaaatgttattgagctgctcctccataagagatattctttttggatcatccacggcttgtctcgcaccatcattgacataaag |
110 |
Q |
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| T |
40683860 |
catcctcatatccacgtaaaatgttattgagctgctcctccataagagatattctttttggatcatccacggcttgtctcgcaccatcattgacataaag |
40683761 |
T |
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| Q |
111 |
gacacaagctgttctcctgttatgagtccatacttcagctacaaccacgttaaaatggaggctagcaagaacagctgatatctcagacaacagaccaggc |
210 |
Q |
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| T |
40683760 |
gacacaagctgttctcctgttatgagtccatacttcagctacaaccacgttaaaatggaggctagcaagaacagcagatatctcagacaacagaccaggc |
40683661 |
T |
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| Q |
211 |
cggtctctcccgattagctcaatcactatatgatcaccaacagaatgcacccc |
263 |
Q |
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| T |
40683660 |
cggtctctcccgattagctcaatcactatatgatcaccaacagaatgcacccc |
40683608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 10143777 - 10143932
Alignment:
| Q |
95 |
catcattgacataaaggacacaagctgttctcctgttatgagtccatacttcagctacaaccacgttaaaatggaggctagcaagaacagctgatatctc |
194 |
Q |
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|||||||||||||||| ||||| ||| ||| ||||||||||||||| ||||||||| ||| ||| || || |||| ||| || || |||||||||||||| |
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| T |
10143777 |
catcattgacataaagtacacatgctattcgcctgttatgagtccaaacttcagctgcaatcacattgaattggaagcttgccaggacagctgatatctc |
10143876 |
T |
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| Q |
195 |
agacaacagaccaggccggtctctcccgattagctcaatcactatatgatcaccaa |
250 |
Q |
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| T |
10143877 |
agacaaaagacctgggcggtcccgaccaatgagctcaatggctgtatgatcaccaa |
10143932 |
T |
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