View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2066_high_11 (Length: 250)
Name: NF2066_high_11
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 25883236 - 25883452
Alignment:
| Q |
26 |
taggcaagttttgttttcttttcaaggaaaacaaattatatcaatgtcatctactcgctaacttgaaaatgcaatgaatgcatattaatttactaattgg |
125 |
Q |
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| T |
25883236 |
taggcaagttttgttttcttttcaaggaaaacaaattatatcaatgtcatctactcgctaacttgaaaatgcagtgaatgcatattaatttactcattgg |
25883335 |
T |
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| Q |
126 |
nnnnnnnnaaaaaatacttacgcttaaaagacacttaatatgagacggaggatagggtataccgaaaataaactaccatgattatatcatcagagccaat |
225 |
Q |
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| T |
25883336 |
tttttttaaagaaatacttaaccttaaaagacacttaatatgagacggaggatagggtataccgaaaataaactatcatgattatatcatcagagccaat |
25883435 |
T |
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| Q |
226 |
caagctttccattacata |
243 |
Q |
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| T |
25883436 |
caagc-ttccattacata |
25883452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 25904541 - 25904612
Alignment:
| Q |
172 |
ggaggatagggtataccgaaaataaactaccatgattatatcatcagagccaatcaagctttccattacata |
243 |
Q |
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| T |
25904541 |
ggaggatagggtataccaaatataaattatcatgattatattatcagggccaatcaagctttccattacata |
25904612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 25923566 - 25923637
Alignment:
| Q |
172 |
ggaggatagggtataccgaaaataaactaccatgattatatcatcagagccaatcaagctttccattacata |
243 |
Q |
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| T |
25923566 |
ggaggatagcgtatactaaaaatatattatcatgattatattatcagggccaatcaagctttccattacata |
25923637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 25903631 - 25903675
Alignment:
| Q |
30 |
caagttttgttttcttttcaaggaaaacaaattatatcaatgtca |
74 |
Q |
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| T |
25903631 |
caagttttgttttcttttcaatgaaaacaaattatattaatgtca |
25903675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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