View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2066_high_12 (Length: 247)
Name: NF2066_high_12
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 33367830 - 33367599
Alignment:
| Q |
1 |
aagttgctttctcatgcaaaagaagagtccaaacgtgatggtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgatatgccga |
100 |
Q |
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| T |
33367830 |
aagttgctttctcatgcaaaagaagagtccaaacgtgattgtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgatatgccga |
33367731 |
T |
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| Q |
101 |
accacatttaccaagtctcttgggacgtgattctagttgatgggccaagagggtactttccggcagcttcagggagaatgtcggcaatatttactgcggc |
200 |
Q |
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| T |
33367730 |
accacatttaccaagtctcttgggacgtgattctagttgatgggccaagagggtactttccggcagctccagggagaatgtcggcaatatttactgcggc |
33367631 |
T |
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| Q |
201 |
agtgttagctcgtagcaagaaagtgggaaaaa |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33367630 |
agtgttagctcgtagcaagaaagtgggaaaaa |
33367599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 33372025 - 33371800
Alignment:
| Q |
7 |
ctttctcatgcaaaagaagagtccaaacgtgatggtaagccggtacaaaatttgttattctcagaatgtaaactcggaatcaatgatatgccgaaccaca |
106 |
Q |
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|||||||||||||||| | |||| |||| ||| |||| || || || ||||||||||||||||| ||||||||||||||||| ||| ||||||| |||| |
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| T |
33372025 |
ctttctcatgcaaaagcaaagtctaaacacgattgtaaacctgtgcagaatttgttattctcagagtgtaaactcggaatcaacgatttgccgaatcaca |
33371926 |
T |
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| Q |
107 |
tttaccaagtctcttgggacgtgattctagttgatgggccaagagggtactttccggcagcttcagggagaatgtcggcaatatttactgcggcagtgtt |
206 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| || ||||| || |||||||| |
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| T |
33371925 |
tttaccaagtctcttgggatgtgattcttgttgatgggccaagagggtactttccggcagctccggggagaatgtcggcgatctttacagcagcagtgtt |
33371826 |
T |
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| Q |
207 |
agctcgtagcaagaaagtgggaaaaa |
232 |
Q |
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| T |
33371825 |
ggctaggagcaagaaaatgggaaaaa |
33371800 |
T |
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