View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2066_high_13 (Length: 237)
Name: NF2066_high_13
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 26484123 - 26483898
Alignment:
| Q |
1 |
tttgttaaccaaataatgacaaattaagagaaaaatagtgaaagataagaattgtgtactcactctttcagctaagctatgactatcagtagcttgacca |
100 |
Q |
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| T |
26484123 |
tttgttaaccaaataatgacaaattaagagaaaaatagtgaaagataagaattgtgtactcactctttcagctaagctatgactatcagtagcttgacca |
26484024 |
T |
|
| Q |
101 |
cgacgtgctcgaacatgaatgtaatcaggcttatgattttgaatctctgaaccttttgaattttccttggaaccaacatcgtcacaattttctctatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26484023 |
cgacgtgctcgaacatgaatgtaatcaggcttatgattttgaatctctgaaccttttgaattttccttggaaccaacatcatcacaattttctctatttt |
26483924 |
T |
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| Q |
201 |
tcaactttgtattcttatttcccttt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26483923 |
tcaactttgtattcttatttcccttt |
26483898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 54615899 - 54615828
Alignment:
| Q |
57 |
tactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcag |
128 |
Q |
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|||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||| |
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| T |
54615899 |
tacttactctttcagctaagctatgactgtcggtggcttggccacgacgtgctcgaacatgaatgtaatcag |
54615828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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