View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2066_high_14 (Length: 234)
Name: NF2066_high_14
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_high_14 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 22079632 - 22079850
Alignment:
| Q |
1 |
gttgcttttatgctcatttcatttttctcgacatcaaagttttgcagagtaaaggtagtgttctcagcaattatacccttaaacttatctttgagttcag |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
22079632 |
gttgcttttatactcatttcatttttctcgacatcaaagttttgcagagtaaaggtagtgttctcaacaattctacccttaaactgatctttgagttcaa |
22079731 |
T |
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| Q |
101 |
atggcagaattatttgaatacgatcaccctgatggaaattaggagtgaattatacatactttttaaaacattagtttctattaaaattaattatagatca |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22079732 |
atggcagaattatttgaatacgatcaacctgatggaaattagaagtgaattatacatactttttaaaacattagtttctattaaaattaattatagatga |
22079831 |
T |
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| Q |
201 |
gtgatgttgtaaccatcat |
219 |
Q |
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||||||||||||||||||| |
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| T |
22079832 |
gtgatgttgtaaccatcat |
22079850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 124766 - 124897
Alignment:
| Q |
1 |
gttgcttttatgctcatttcatttttctcgacatcaaagttttgcagagtaaaggtagtgttctcagcaattatacccttaaacttatctttgagttcag |
100 |
Q |
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|||||||| ||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||| |||||||| |||||||| |||| |
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| T |
124766 |
gttgctttgatggtcatctcatttttctcaacatcaaagttttgcagagtaaaagtagtgttctcagcaactctactcttaaactgatctttgaattcat |
124865 |
T |
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| Q |
101 |
atggcagaattatttgaatacgatcaccctga |
132 |
Q |
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| T |
124866 |
ttggcaaaatgacttgaatacgatcaccctga |
124897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 23699933 - 23700060
Alignment:
| Q |
5 |
cttttatgctcatttcatttttctcgacatcaaagttttgcagagtaaaggtagtgttctcagcaattatacccttaaacttatctttgagttcagatgg |
104 |
Q |
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|||| ||| |||| ||||||||||| || ||||||| ||||||||| || |||| ||||||||||||| ||| ||||||||||||||||| ||||| ||| |
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| T |
23699933 |
ctttgatggtcatatcatttttctctacctcaaagtcttgcagagtgaaagtagcgttctcagcaattctactcttaaacttatctttgaattcagttgg |
23700032 |
T |
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| Q |
105 |
cagaattatttgaatacgatcaccctga |
132 |
Q |
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|| ||||| |||||| |||||||||||| |
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| T |
23700033 |
caaaattacttgaattcgatcaccctga |
23700060 |
T |
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