View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2066_low_10 (Length: 368)
Name: NF2066_low_10
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 36030939 - 36030770
Alignment:
| Q |
18 |
atgggaacaatgtttacatttgacttgtaacatgagttgggtatcccatgaactctttccctattgaactcattattttgttgttgaaaaacaaattcca |
117 |
Q |
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| T |
36030939 |
atgggaacaatgtttacatttgacttgtaacatgggttgggtatcccatgaactctttccctattgaactcattattttgttgttgaaaaacaaattcca |
36030840 |
T |
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| Q |
118 |
ctttgttaacttcaatttgaaaatgattgtatgacataaaaactataaatttctcctatcattgttttaa |
187 |
Q |
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| T |
36030839 |
ctttgttaacttcaatttgaaaatggttgtatgacataaaaactataaatttctcctatcattgttttaa |
36030770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 254 - 356
Target Start/End: Complemental strand, 36027377 - 36027275
Alignment:
| Q |
254 |
ctcttgattacacaatttggaaaggatttgttcggatattggccaatccaaacggtacaaaatacatgcatggtcatatatttgaaattcgttatcttct |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027377 |
ctcttgattacacaatttggaaaggatttgttcggatattggccaatccaaacggtacaaaatacatgcatggtcatatatttgaaattcgttatcttct |
36027278 |
T |
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| Q |
354 |
tca |
356 |
Q |
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| T |
36027277 |
tca |
36027275 |
T |
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