View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2066_low_16 (Length: 230)
Name: NF2066_low_16
Description: NF2066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2066_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 8718639 - 8718836
Alignment:
| Q |
15 |
atgaaataaataatgtgtgtaaaaaagaaaacacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctatt |
114 |
Q |
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| T |
8718639 |
atgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctatt |
8718738 |
T |
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| Q |
115 |
tttcactccaaataaattagaactatcatgttctgacgataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattca |
212 |
Q |
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| T |
8718739 |
tttcactccaaataaattagaactatcatgttctgacgataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattca |
8718836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 8672322 - 8672524
Alignment:
| Q |
10 |
gtgagatgaaataaataatgtgtgtaaaaaagaaaacacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcct |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8672322 |
gtgacatgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcct |
8672421 |
T |
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| Q |
110 |
ctatttttcactccaaataaattagaactatcatgttctgacg--ataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaac |
207 |
Q |
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| T |
8672422 |
ctatttttcactccaaataaattagaactatcatgttctgacgatataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaac |
8672521 |
T |
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| Q |
208 |
att |
210 |
Q |
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| T |
8672522 |
att |
8672524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 8590848 - 8590909
Alignment:
| Q |
51 |
aaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctattt |
115 |
Q |
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| T |
8590848 |
aaatatttgacttaataacaagagaataaatgt---ctaataatgataccaataaccctctattt |
8590909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 8590925 - 8590958
Alignment:
| Q |
113 |
tttttcactccaaataaattagaactatcatgtt |
146 |
Q |
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| T |
8590925 |
tttttcactccaaataaattagaactatcatgtt |
8590958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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